Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00452 ATGTTCAAAGAGTACACAATTGAACTTTTTGAAATGCTACAATGGCTTGTACATTTCTTACTTCTCTTTTGTTCCTTCCAAAATCTTGGTTATTTTGTCACATCCCAAGGTAACCAAGAAGACACTACATGTTTATCTGAGCCTCTTGTTGCTAAGAAAGTTCAAACTACACAAACACAACTTGGGCGTGCTACCCTTCTCAGTAAGTTGACTTTCTCTTGGGTTAATTCTTTACTCAGGCTGGGTTACTCAAAGCCACTAGCTCTTGAAGATATACCATTTCTTCTTCCTGAAGATGAAGCGAACTTGGCTTACCAAGCTTTTATGCATGCATGGGAATCCCTTGTAAGGGAGAGCAGCAATGACAACAACAAATACTTGGTTCTTTGGTCTGTAGCTAGGACTTTCTCAAAGGAGAACATATTAATAGCATTTTATGCATTGCTAAGAAGTATTTGTATGATAATTTCTCCTCTAATACTGTATGCTTTTGTAAACTACACAAATAACACTGAGGCAGATCTCAAAGAAGGTTTTTCCATACTGGGTTTTATGGTTCTCAGCAAAGTGGTCGAGTCTTTGTGTCAGAGACATTACAGTTTTGGCTCAAGGAGATCAGGAATGAAAATTAGATCAGCTCTGATGGTGGCTGTGTATCAGAAACTGCTAAAGCTTTCCAGCTCAGCAAGAACAAGGCACTCAACTGGAGAAGTTGTGAATTACATTGCAGTTGACGCATATCGATTGGGAGAATTTCCATGGTGGTTTCATATAGCATGGACTTCTGCAGTTCAAATTGTTTTGTCCATCATTATCCTTTTTAGTGTTGTGGGTGCTGGTGCTCTTCCAGGTTTAGTCCCTCTTCTCATCTGTGGACTTCTCAATGTACCATTTGCAAAGATCATACAAAATTGTCAGTCACAATTCAGGATGGCACAAGATGAGCGTCTCAGATCAACTTCAGAAATTCTAAATAGTATGAAAATCATCAAGTTACAATCCTGGGAAGATAAATTCAAGAACATAGTTTTGTCCCTACGTGCTAAAGAATTCAAATGGTTGACTAAGGTACAGATCATAAAAGCTAATGGGGCATTTCTATATTGGATGAATCCCACCATTGTTCCTACTGCTGTTTTCCTTGGGTGTGCTCTTTTCAAAAGTGCCCCACTGAATGCTGGGACCATTTTCACAGTCATTACAGCATTGAGGATAATGGGAGAACCTGTTCGATTGATCCCAGAGGCTCTATCTATTATGATCCAAGTTAAGGTCTCCTTTGATCGTCTCAATACCTTTTTTCTTGATGAAGAGCTAAATAGTATTAATGGTTATGGAAGAAATATAAAGCAAAGTTCAGTTAATGCAGTGGAAATCCAGGAAGGAAACTTCATTTGGGATCATGAATCAGTGTCCCCAACTTTAAGAGAGGTGAAGTTAGAAATCAAATGGGGACAGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCGTCTCTTTTGTATGCAGTACTTGGAGAGATTCCCAAGATCTCAGGAACTGTTAATGTTGGTGGAACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGAGATAATATACTCTTTGGAAAGCCAATGAACAAAACCAGATATGAGAATGCCACTAAAGTTTGTGCCTTAGATATGGATATTAATGATTTTAGCCATGGTGATCTTACCGAAATAGGCCAGCGAGGGATTAACATGAGTGGAGGACAAAGGCAAAGGATTCAACTAGCTCGAGCAGTTTATAATGATGCTGACATCTATCTCCTTGATGACCCATTCAGTGCAGTTGATGCACAAACAGCTGCTATTCTGTTCCATGACTGTGTCATGACTGCTTTAAGAGAGAAAACAGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATTCGATCCTGGTAATGGAGGATGGAAAAGTTACTCAATCAGGTAGTTATGAAGATCTCCAGTCCGCTGGCACTGCCTTTGAACAGCTTGTGAGTGCCCATAAAGCTGCATTAACAGGATTGGATAAAAAATATGAAAATAGTAGTGATTCTGATATTGAATTTATGGTACATCCTGAAGAATCTCAAAGTTTTAATCTCGTTAACAAGCAAAGTGAGCAGGTGATTTCTACCAAGGGACAACTTGGGGCACAACTTACACAAGAAGAAGAAAAAGTGATTGGTGATGTTGGGTGGAAACAATTCTGGGACTATATTTCATTTTCCAGGAGCTCATTCGTGTTTTGTTTAACCATGTTAGCACAATTCGCTTTTATTGCTTTGCAGACTGCATCAACGTATTGGCTTGCTCTAGCTATTGAAATGCCAAAAGTAACCAGTGGCATTTTGATAGGAGTTTACGCATCATTTTCATTTCTTAGTGCTATATTTATATATATAAGGTCTTTCCTAGCTGCTTATCTTGGATTAAAAGCTTCTGAAGCCTTCTTCTCAAGTTTCACTTCAGCTATGTTCAATGCTCCGATGTTGTTCTTTGACTCAACCCCCGTAGGAAGGATTTTAACCCGAGTTTCATCAGATTTGAGTATCTTGGACATTGATATTCCTTATTCTCTCACTATAGTCTCATTTATACCAGCTGAAATTCTAGTGATAATATGTGCAATGGCATCAATAACATGGCCAGTTCTTATTGTTGCTGTTCCGACTACGGTGGCATCAATATATATTCAGGGATATTATCAAGCCTCTTCAAGGGAATTGATGAGGATCAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCTGCAGAGACATCACTTGGAGTGGTTACTATACGAGCATTGAACATGGTAAACAGATTTTTCAACAACTACCTAAAGCTTGTGGACATCGATGCAGCACTGTTCTTTCACTCTAATGTGGCCACAGAATGGTCAATTTTAAGGATTGAAATACTTCAAAACTTGACAGTATTCACAACAGCTTTATTACTTATTCTACTTCCCAGAGGATATGTATCATCGGGTCTTGTGGGATTGTCTCTTTCTTATGCGTTGACATTGAAAGAATCTCAAGTATTTTGGAGTAGGATGTTTAGCATGCTGTCAGACCATATCATCTCTGTTGAAAGAATCAAGCAATTCATTCACATACCAGCAGAGCCTCCTGCCATTGTGGAGGATAACAGACCTCCATCTTCATGGCCTTCGAGGGGAAGGATCGATCTTCGAGCCCTAGAGATTAGATATAGTCCAAATGCTCAGTTAGTCCTCAAGGGTATAAATTGCACGTTTATAGAAGGGAGTAGAGTGGGAGTTGTTGGAAGGACTGGAAGTGGCAAAACTACACTCATAAGTGCTTTGTTTCGCTTAGTTGAACCTTCGAGAGGTGATATTCTAATAGATGGGATCAACATATGCTTAATGGGGTTAAAGGATTTGAGAATGAAACTAAGTATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACCAACTTGGACCCTCTAGACCTCTATGAAGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTAAAGGAAACAATCGGCAAGCTACCAGGTCTCTTGGACTCTTCTGTGAGTGACGAAGGTGGAAATTGGAGCTTGGGACAACGCCAACTGTTTTGCCTTGGTAGAGTACTACTTAAGAAGAACAGAATACTGGTCCTAGATGAAGCTACTGCGTCCATTGACTCTGCAACAGATGCCATTCTACAACAAGTGATAAGACAAGAATTTGCAGAATGCACAGTCATAACTGTGGCTCACAGAGTTCCGACTGTAATAGATAGTGACATGGTCATGGTCCTGTCTCATGGGAAACTAGTAGAATATGACGAGCCTTCAAAACTTATGGGGACAAACTCTTGGTTCTCTAATTTGGTTTCTGAATATTGGTCGAGCTGCAGGAAGAACTCATCGCCCAATATTATCAGGAAGCAACATTGA 3987 0.3973 MFKEYTIELFEMLQWLVHFLLLFCSFQNLGYFVTSQGNQEDTTCLSEPLVAKKVQTTQTQLGRATLLSKLTFSWVNSLLRLGYSKPLALEDIPFLLPEDEANLAYQAFMHAWESLVRESSNDNNKYLVLWSVARTFSKENILIAFYALLRSICMIISPLILYAFVNYTNNTEADLKEGFSILGFMVLSKVVESLCQRHYSFGSRRSGMKIRSALMVAVYQKLLKLSSSARTRHSTGEVVNYIAVDAYRLGEFPWWFHIAWTSAVQIVLSIIILFSVVGAGALPGLVPLLICGLLNVPFAKIIQNCQSQFRMAQDERLRSTSEILNSMKIIKLQSWEDKFKNIVLSLRAKEFKWLTKVQIIKANGAFLYWMNPTIVPTAVFLGCALFKSAPLNAGTIFTVITALRIMGEPVRLIPEALSIMIQVKVSFDRLNTFFLDEELNSINGYGRNIKQSSVNAVEIQEGNFIWDHESVSPTLREVKLEIKWGQKIAVCGPVGAGKSSLLYAVLGEIPKISGTVNVGGTIAYVSQTSWIQSGTVRDNILFGKPMNKTRYENATKVCALDMDINDFSHGDLTEIGQRGINMSGGQRQRIQLARAVYNDADIYLLDDPFSAVDAQTAAILFHDCVMTALREKTVILVTHQVEFLSEVDSILVMEDGKVTQSGSYEDLQSAGTAFEQLVSAHKAALTGLDKKYENSSDSDIEFMVHPEESQSFNLVNKQSEQVISTKGQLGAQLTQEEEKVIGDVGWKQFWDYISFSRSSFVFCLTMLAQFAFIALQTASTYWLALAIEMPKVTSGILIGVYASFSFLSAIFIYIRSFLAAYLGLKASEAFFSSFTSAMFNAPMLFFDSTPVGRILTRVSSDLSILDIDIPYSLTIVSFIPAEILVIICAMASITWPVLIVAVPTTVASIYIQGYYQASSRELMRINGTTKAPVMNFAAETSLGVVTIRALNMVNRFFNNYLKLVDIDAALFFHSNVATEWSILRIEILQNLTVFTTALLLILLPRGYVSSGLVGLSLSYALTLKESQVFWSRMFSMLSDHIISVERIKQFIHIPAEPPAIVEDNRPPSSWPSRGRIDLRALEIRYSPNAQLVLKGINCTFIEGSRVGVVGRTGSGKTTLISALFRLVEPSRGDILIDGINICLMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLDLYEDDEIWKALEKCQLKETIGKLPGLLDSSVSDEGGNWSLGQRQLFCLGRVLLKKNRILVLDEATASIDSATDAILQQVIRQEFAECTVITVAHRVPTVIDSDMVMVLSHGKLVEYDEPSKLMGTNSWFSNLVSEYWSSCRKNSSPNIIRKQH* 1329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00452 1328 CDD ABC_6TM_ABCC_D1 142 430 IPR044746 GO:0140359
Lapu10g00452 1328 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 764 1023 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu10g00452 1328 Pfam ABC transporter 475 609 IPR003439 GO:0005524
Lapu10g00452 1328 SUPERFAMILY ABC transporter transmembrane region 129 430 IPR036640 GO:0005524|GO:0016020
Lapu10g00452 1328 FunFam ABC transporter C family member 10 124 438 - -
Lapu10g00452 1328 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1078 1310 IPR003439 GO:0005524
Lapu10g00452 1328 ProSitePatterns ABC transporters family signature. 582 596 IPR017871 GO:0005524|GO:0016887
Lapu10g00452 1328 Gene3D ABC transporter type 1, transmembrane domain 116 438 IPR036640 GO:0005524|GO:0016020
Lapu10g00452 1328 Gene3D ABC transporter type 1, transmembrane domain 726 1057 IPR036640 GO:0005524|GO:0016020
Lapu10g00452 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 679 IPR027417 -
Lapu10g00452 1328 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 141 422 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu10g00452 1328 Gene3D - 464 702 IPR027417 -
Lapu10g00452 1328 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 459 680 IPR003439 GO:0005524
Lapu10g00452 1328 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 63 1312 - -
Lapu10g00452 1328 FunFam ABC transporter C family member 5 725 1057 - -
Lapu10g00452 1328 CDD ABCC_MRP_domain1 457 657 - -
Lapu10g00452 1328 Pfam ABC transporter transmembrane region 141 407 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu10g00452 1328 Pfam ABC transporter transmembrane region 761 1022 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu10g00452 1328 CDD ABCC_MRP_domain2 1074 1294 - -
Lapu10g00452 1328 SUPERFAMILY ABC transporter transmembrane region 749 1058 IPR036640 GO:0005524|GO:0016020
Lapu10g00452 1328 SMART AAA_5 1102 1294 IPR003593 GO:0016887
Lapu10g00452 1328 SMART AAA_5 484 657 IPR003593 GO:0016887
Lapu10g00452 1328 Pfam ABC transporter 1093 1241 IPR003439 GO:0005524
Lapu10g00452 1328 FunFam ABC transporter C family member 3 1059 1310 - -
Lapu10g00452 1328 CDD ABC_6TM_ABCC_D2 760 1051 IPR044726 GO:0140359
Lapu10g00452 1328 FunFam Multidrug resistance protein associated1 435 700 - -
Lapu10g00452 1328 Gene3D - 1059 1309 IPR027417 -
Lapu10g00452 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1066 1309 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00452 Lapu-Chr10 6902117 6908262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00452 438 690 Calmodulin-binding Proteins AT2G36910 26.374 1.18e-20 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00452 - - pvu:PHAVU_010G136900g 2424.43