Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00444 ATGGGGAATCAGAAGCAGAAGTGGACGCAGGATGAAGAAGACGCGCTCATCGCCGGAGTTGAAAAACACGGTCCTGGAAAGTGGAAGAACATCCTCAAAGATCCCCAATTCGCCCCTTTCCTCACTTCCCGTTCTAACATTGACCTCAAGGACAAATGGCGGAATTTGAGCGTCAGTAACGGTTCTCAAGGCTCCAAAGACAAGTCTAGACTTCCCAAGCTCAAGGCTCTTCCTGCTCCTCCTACTTCCGCTACCACCTCCTCCACCACAACCGCGACACCCCAAAACGCCGCTCCTGCTCTTCCAAACGCGGCTGATGTCGCTGTTCCTGATTCTTCTCTGAATGATCAAGATGTCAAAAACCCTCCGAGGTATAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAGAGATAGTAATGGATCTGATCTAAATGCCATTGTCAGTTTCATTGAGCAAAAACATCAGGTTCCTCAAAATTTTAGAAGAGCATTAAGCACAAGGTTGAGGAGGCTTGTTAGTCAAGGAAAACTTGAAAAGGTACAAAATTGTTACAAAATAAAAAAAGATGTCTCCTCAGGAACAAAATCACCTTCACCAAAACCAAGGGATGTCCGGCCCGTACCGCCACAACCACAACCAGCACCACAACCACAACGGGCTTCTGTCGTTACAGCATCTAATGAGACAATAAAGGAAGCTGCTGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATTTGGCTGCGGAAGCAGTAAAGGAGGCAGAAAAAATATCATTGCTGGTTGAACATAGTGATTCAATGTTGCAGCTAGCCAAAGACATATATGAGCAATGTACTATAGATGAGCTATCTTTCATGCCTATAATTTGTGATTGTTTTTAA 897 0.4448 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKSRLPKLKALPAPPTSATTSSTTTATPQNAAPALPNAADVAVPDSSLNDQDVKNPPRYNAMVFEALSALRDSNGSDLNAIVSFIEQKHQVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKDVSSGTKSPSPKPRDVRPVPPQPQPAPQPQRASVVTASNETIKEAADTAAYRVADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCTIDELSFMPIICDCF* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00444 298 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lapu10g00444 298 MobiDBLite consensus disorder prediction 80 98 - -
Lapu10g00444 298 MobiDBLite consensus disorder prediction 54 98 - -
Lapu10g00444 298 Gene3D - 118 203 IPR036388 -
Lapu10g00444 298 Pfam linker histone H1 and H5 family 123 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu10g00444 298 MobiDBLite consensus disorder prediction 187 222 - -
Lapu10g00444 298 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Lapu10g00444 298 CDD H15 123 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu10g00444 298 FunFam Telomere repeat-binding factor 1 2 58 - -
Lapu10g00444 298 SUPERFAMILY "Winged helix" DNA-binding domain 121 201 IPR036390 -
Lapu10g00444 298 Gene3D - 2 58 - -
Lapu10g00444 298 FunFam Telomere repeat-binding factor 1 8 87 - -
Lapu10g00444 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Lapu10g00444 298 PANTHER SINGLE MYB HISTONE 4 1 284 IPR044597 GO:0003691
Lapu10g00444 298 SMART sant 4 59 IPR001005 -
Lapu10g00444 298 MobiDBLite consensus disorder prediction 202 217 - -
Lapu10g00444 298 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Lapu10g00444 298 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu10g00444 298 SMART h15plus2 119 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu10g00444 298 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00444 Lapu-Chr10 6849059 6852688 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00444 1 291 Single Myb Histone (SMH) Gene Family AT1G72740 46.075 1.36e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu10g00444 Linker_histone 1.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00444 K09422 - gmx:778177 380.563