Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00421 ATGAAGAACTTAACTGAGAAAGGCTCTGGTTCTACCCTTTTAACATCTCCTTATGCTCTTGGATGCTCATCGTGGGGGACTTCCTCTGAATCTGATGCTCAACAGTCATCCATGTCCAGAAGTTTGACCTTGAAAATGGGTGTTCTGCCCCAAGAATGCCATAATAAGACTAAGGCATTGAATTTTCAATATCAAGACCGAGATTCATCTTCATCTCAATCAACTGGTCAGTCTTATCCGGAAGTTGGTTCAGCGCAATCAGGTCAAATTTCTGTCCAGTGTAGCAGTTCTTCTGCTTGTTCAACACTTGACCCAACTGGGAGGAAGAGTGTGGAAGGTGTCATCAGGTCATCTATGCGGGGTCAGGATTTTACCTTCCCTCCTTCACAACTGTGTCACAACCAACCACTTACTCATACTGCATTCCACCTTGCTGAGCCGTGCTTTAGTGGCCTACTAGCTTCTCCATATGGGCCACAACCTAATATTCATCATGCTCAACTAATAGGAATGACTACTGCTCGAATTCCTCTGCCACTTGATCTTAGTGAGGAGCCTATATATGTGAATGCAAAGCAGTACCATGCTATCATGAGGCGCAGGCAATACCGTGCAAAACTTGAAGCACAGAACAAACTCATCAAAGAACGGAAACCATATCTTCACGAGTCTCGCCATCTACATGCATTGAAGAGAGCTAGAGGTTCTGGTGGTCGGTTCTTGAATACCAAAAAGCTCGAAGAGTCGAAACTCACTTCAGCAAACCATGCCATAGATGTTTCAAGCTGTACTCATTTGAATCTGAGGGGGAACATGTCAAAATCTAAGGTGCATGTAGTGGAGAACTTGAACTACAGAGATGGTGCTTCCACAACCACCTGTTCCGATATTACTTGTGCATCTAATAGTGGTGATCTCTTCCAACAACATCAATCAGACTTCAGATTATGTGGTTACCCTTCTCATATTGGAAGGAACATGCAGGGTTACTCTGCTGATATTGGTGGTGGTGGTGGTGGAAACCAACATCGTCTATCAGTCCTTATGTGA 1050 0.4419 MKNLTEKGSGSTLLTSPYALGCSSWGTSSESDAQQSSMSRSLTLKMGVLPQECHNKTKALNFQYQDRDSSSSQSTGQSYPEVGSAQSGQISVQCSSSSACSTLDPTGRKSVEGVIRSSMRGQDFTFPPSQLCHNQPLTHTAFHLAEPCFSGLLASPYGPQPNIHHAQLIGMTTARIPLPLDLSEEPIYVNAKQYHAIMRRRQYRAKLEAQNKLIKERKPYLHESRHLHALKRARGSGGRFLNTKKLEESKLTSANHAIDVSSCTHLNLRGNMSKSKVHVVENLNYRDGASTTTCSDITCASNSGDLFQQHQSDFRLCGYPSHIGRNMQGYSADIGGGGGGNQHRLSVLM* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00421 349 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 185 240 IPR001289 GO:0003700|GO:0006355
Lapu10g00421 349 ProSitePatterns NF-YA/HAP2 subunit signature. 188 208 IPR018362 GO:0003677|GO:0016602
Lapu10g00421 349 Gene3D - 183 244 - -
Lapu10g00421 349 SMART cbf3 182 243 IPR001289 GO:0003700|GO:0006355
Lapu10g00421 349 PRINTS CCAAT-binding transcription factor subunit B signature 186 208 IPR001289 GO:0003700|GO:0006355
Lapu10g00421 349 PRINTS CCAAT-binding transcription factor subunit B signature 217 240 IPR001289 GO:0003700|GO:0006355
Lapu10g00421 349 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 39 296 IPR001289 GO:0003700|GO:0006355
Lapu10g00421 349 ProSiteProfiles NF-YA/HAP2 family profile. 183 243 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00421 Lapu-Chr10 6599731 6604406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00421 15 347 CCAAT-HAP2 Transcription Factor Family AT1G17590 43.787 8.42e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lapu10g00421 CBFB_NFYA 1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00421 K08064 - gmx:100500765 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00421 10 6599731 6604406 Lapu10g00421 10 6599731 6604406 ECH
Lapu5g00266 5 2177562 2181241 Lapu10g00421 10 6599731 6604406 PCT