Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00418 ATGTTGACTTGCATAGCGTGTACCAAACAACTAAATAATGGATCTCTTCGCCAAGAAGAGGAGGAAGAAGCTGTTCACACAACCAGCACCAAGCAAGCCATCAAGGCTCTCACTGCACAGATCAAGGACATGGCAGTGAAAGCTTCTGGGGCCTATAAGAGCTGCAGACCTTGTTCAGGATCTTCCAACGGTAACAGGAATAGGAAGTATGCAGACTCAGATATGGGTTCAGATTCAGCAAGGTTCAACTGGGCCTACCGCAGAACTGGGAGCTCCAATTCAACCCCAAGGATGTGGGGGAAGGAAACAGACGGTGGTAGGGTGAAAGGGCTTTCCAGTGGGGAAGGAACACCAGCTTCAGTGAGTGGACGCACTGAGTCAGTTGTGTTCATGGAGGAGGATGAGCCTAAGGAGTGGATTGCACAAGTGGAGCCTGGTGTGCTTATTACTTTTGTTTCATTGCCTCAGGGAGGGAATGATCTCAAAAGGATACGGTTCAGTACATGTTTGTTTGGGAGTGATCACATGCTTTTCAAAGGCTCTCCAGATTCTAGATTGGCAGGATCTATCTTGTTTCTATTGTGCCTCTTTGGAGGACCTCAGCTTTGTTCCATTGTCAGTAACTCATGCTTGGCTGGTGTGGTATGTCGTGAAATGTTTAATAAATGGCAAGCTCAGAGGTGGTGGGCAGAGAATTATGACAAGGTAATGGAGTTGTACAATGTTCAGAGGTTCAATCAGCAAGCAGTTCCTCTTCCAACCCCACCTAGATCTGAAGATGAGAGCTCAAAGATTGAATCTGCTAGGGACAGTCCTGTCACTCCTCCACTCAGCAAAGAGCGCCCACCCCGCCATTTTCACCACCCAATGGGAATGGGCTACTCCTCATCAGATTCACTGGATCACCACCAAATGCATCCTCACCCTTGCTATGAGACAAGTGGTCTGGCATCAACACCTAATCTTTCCAACATTAGTGCACCAAAGACTGAAAAATCATCCCTTGATGGTTCTGTAAGAACCAGTTCATCTGGAGAAGATCACTCAGGCGAGTTTTCAATCAGCAATGCCAGTGATATGGAAACTGAATGGGTTGAACAGGATGAACCAGGAGTCTACATCACTATCAGAGCACTGCCAGGGGGAACCAGAGAACTCAGGCGTGTCCGATTCAGCCGAGAGAGGTTTGGAGAAATGCATGCGAGATTGTGGTGGGAAGAGAACCGTGCTAGGATACAAGAACAATACTTGTGA 1254 0.4761 MLTCIACTKQLNNGSLRQEEEEEAVHTTSTKQAIKALTAQIKDMAVKASGAYKSCRPCSGSSNGNRNRKYADSDMGSDSARFNWAYRRTGSSNSTPRMWGKETDGGRVKGLSSGEGTPASVSGRTESVVFMEEDEPKEWIAQVEPGVLITFVSLPQGGNDLKRIRFSTCLFGSDHMLFKGSPDSRLAGSILFLLCLFGGPQLCSIVSNSCLAGVVCREMFNKWQAQRWWAENYDKVMELYNVQRFNQQAVPLPTPPRSEDESSKIESARDSPVTPPLSKERPPRHFHHPMGMGYSSSDSLDHHQMHPHPCYETSGLASTPNLSNISAPKTEKSSLDGSVRTSSSGEDHSGEFSISNASDMETEWVEQDEPGVYITIRALPGGTRELRRVRFSRERFGEMHARLWWEENRARIQEQYL* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00418 417 MobiDBLite consensus disorder prediction 249 353 - -
Lapu10g00418 417 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 417 IPR044532 -
Lapu10g00418 417 MobiDBLite consensus disorder prediction 314 353 - -
Lapu10g00418 417 ProSiteProfiles BRX domain profile. 362 417 IPR013591 -
Lapu10g00418 417 Pfam Transcription factor BRX N-terminal domain 22 58 IPR027988 -
Lapu10g00418 417 ProSiteProfiles BRX domain profile. 137 241 IPR013591 -
Lapu10g00418 417 Pfam Transcription factor regulating root and shoot growth via Pin3 217 240 IPR013591 -
Lapu10g00418 417 Pfam Transcription factor regulating root and shoot growth via Pin3 361 416 IPR013591 -
Lapu10g00418 417 Pfam Transcription factor regulating root and shoot growth via Pin3 137 173 IPR013591 -
Lapu10g00418 417 MobiDBLite consensus disorder prediction 56 70 - -
Lapu10g00418 417 MobiDBLite consensus disorder prediction 56 76 - -
Lapu10g00418 417 MobiDBLite consensus disorder prediction 88 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00418 Lapu-Chr10 6550735 6555427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00418 1 417 Major Intrinsic Protein MIP AT1G31880 43.519 2.64e-93 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00418 - - gmx:100805480 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00418 10 6550735 6555427 Lapu10g00418 10 6550735 6555427 ECH