Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00413 ATGACACGGCTCTATTCCAATTCTCATTCAATTACGTTCCACTACAAGGCTGCAGAAGGCACAAACCAGACTGAATGTGTTATCTGCTTGACAAGTTTTGAAGAAGAGGAAAGTTTACGGAAGCTTCACACTTGCAAGCACATCTTCCACACCTTTTGCATTGACAAGTGGCTTGGCTCTCATTCAGGTTGTCCACTGTGCCGCACTCAGATTGAAAAGGTGCAATCCCAAAACAGTAGAGTGGCTTTGGAAGAAAATGATCACATGATCATGGTCATTGTGAACTCCTGA 291 0.4364 MTRLYSNSHSITFHYKAAEGTNQTECVICLTSFEEEESLRKLHTCKHIFHTFCIDKWLGSHSGCPLCRTQIEKVQSQNSRVALEENDHMIMVIVNS* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00413 96 ProSiteProfiles Zinc finger RING-type profile. 26 68 IPR001841 -
Lapu10g00413 96 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 79 IPR013083 -
Lapu10g00413 96 SMART ring_2 26 67 IPR001841 -
Lapu10g00413 96 SUPERFAMILY RING/U-box 15 74 - -
Lapu10g00413 96 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 13 78 - -
Lapu10g00413 96 Pfam Ring finger domain 25 68 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00413 Lapu-Chr10 6502241 6502808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00413 10 82 C3H Transcription Factor Family AT5G17600 48.000 1.53e-18 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00413 - K19038 gmx:102661636 176.792