Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00411 ATGTCTTTCCAAGTTTCTCATAAAATCAACCATGTTGTATTGGTTTGTCTGGTGTTTGTAACATCTTCTACTTGTTCCCATCACCCTTCTCAAATAAAGTACGATGTATTTGTTAGCTTTAGAGGTGAAGATGTACGTCGAGGTTTTCTTAGCCATTTGATCGAGGCATTCTCTCGAAAGCAAATTGCTTTCTTCGTAGATGATAACATTCTAAAAGGAAAAGAACTGTCTGAAGCACTATTAGGAGCAATTGAAGGATCATTAGTTTCTTTGGTTATATTTTCAGAAGACTATGCTTCTTCAAGATGGTGTTTGTTAGAACTCGAGAAAATTATTGAGTGCAGGAAAAAAAATGGACAAATTGTAATGCCTATTTTCTACAAAGTAGATCCTTCAGACGTACGACATCAAAGGAAGACTTATGGAGATGCCTTTGTTAAACATGAAAGAAACCTTTGCTTGACTACTGTGCAAAGTTGGCGATCTGCTTTGATTGAATCTGCTAATCTATCAGGATTCCATTTATCAAATTTTCCAGATGAAGCTGAGCTTGTTAAAAAGATAGTTAAATCTGTCGGGAGGACGTTGAATCATGTACACCAAGTTAACTCCAAAGGGCTTGTTGGAGTTGGTAAACGAATTGCAGATGTTGAATCATTGCTGCAATTAGAAGCAACAGATGTTCGCATGATTGGAATTTGGGGCATGGGTGGTATTGGTAAGACAACTATTGCACAAGAAGTATATAATAAACTGTGTTTTCGATATGACAGTTGTTGTTTTCTGGCTAACGTAAGGGAAGAGTCAGGAAGACATGGAATAATCTCTTTGAAGAAAAAGGTTTTTTCAACATTATTAGGAGAAGAACATTGGGAAATTGAAACACGTAATGGGTTGCCGGAGTCCGTTGAGAGAAGACTTCATCGCATGAAGGTTCTTATTATTCTTGATGATGTCGATGACTCAGAGCAACTTGAAATTTTAGCCAGAACAGATTGGTTTGGATCTGGTAGTAGAATCATTGTGACAACCAGAGATAAACATGTGCTTGCTAAAGAGCTTGCTAATGTATACCATGTTGAGGCATTAAACTTCGATGAATCTTTGAGACTTTTCAATTTAAATGCCTTTAAGCAAAAACATCTACAAGCAGAGTTCCATGAGCTATCAAAGAAAGTGGTTGATTGCGCCAAAGGCATTCCACTTGCTCTTAAATTTTGGGGTCAGCGTCTTCTTGGAAAAGATAAAGAGATATGGGAAAGTCAATTAGAAAGACAAGCACTGCACAACAAAGAGGTTCATGATATTATTAAATTGAGTTACAATGATCTTGAGGAGGATGAAAAGAATATTTTTTTGGATATTGCGTGTTTTTTTTATGGGCTGCAACTGGAAGTAAAGTACACAGGTCTTTTATTGAAAGATCGTGATTATTCAGTGGTTGCAGGATTTGAAAGGTTGAAGGATAAAGCTCTTATAAGTATTTCTCAAGAAAATACTGGTAATGAGGGTATCAGAAGCATAGTCGTCAACTTGTTGGGAATGAAGCAACTACATTTAAAGCCACAAGTATTTACTAAGATGAACAATCTCCACTTTCTAAATTTTTACACTGCATGGACTAGCAGTATTTTCCTCGATCAACTGTGGGGCTTGTATCTTCCTCAAGGACTTAAATCTTTGCCGAATGAACTAAGATATCTTGGTTGGGCGCATTATCCTTTGGAATCTTTGCCTTCAAATTTTTCTGGAGAAAATCTAGTCGAGTTGCACTTGCCATATAGCCGAGTGAAAAAACTATGGCAAGAAGTGCCGGATCTTGTGAATTTAAAGGTGCTTATACTGCATTCATCCTCACGAATGAAGGAGCTGCTAGACTTTTCAAAGGCCTCAAATCTTGAAGTAATAGATCTTCGATTCTGTGTAGGGTTGACTAGTGTTCATCCATCAGTTTTCTCTCTCAGAAAGCTTGAGAAATTAGATTTGGATGGATGCAGTTCCCTCACAAGCCTTCGAAGCAATATTCATTTGGACTCTCTTCGTTATCTCTCCCTACACAGATGCCTTGCACTAAAGGATTTCTCAGTGACATCAAAGAATATGATAAGGTTGGATTTAGAACTCACTAGTATCAAGCAACTCCCTCCATCTATTGGATCTCAAAGCAAGCTTGAAAAGTTAAATCTAGCATACACGTACATTGAGAACTTGCCTGAAAGCATGAAAAATCTTACAAGGTTGCGACATCTAGATCTACGATATTGTAGGAGCCTTAGGTCTCTACCAAAGCTTCCTCCATCAATTGAAACACTAGATGTCCGTGAATGCACATCATTGGAGAATGTAAGGTTCCCTTCTATTGCTGAACAATGGAAGGAAAATAAGAAAAAGATTCTCTTTTGGAACTGCCTGAAATTGGATGAACATTCTCTCATGGCTATTGAGACGAATGCGGAAATTAACACGATGAAATTTGCACAGCAGCATTTGTCTACACCTGGTGATGCTCTAGGCACTTATGTGTACCCAGGAAGCCAAGTTCCAGAATGGTTGATGTATAAGGCAACACATGATGATTCCATAACTATTGCTCCACATTCCTCTCACTTGGGCTACATTTTTTGCTTCATTGTTCCGGAAGTGCCATATGGGGATACCGTTTTGAAATTGAAGATAAGTACTGAAGGTGAAGGTGGAGTTGAAGGTGACAGTATGATGGTGTACTTAGATAGATCACATCATGGTATTAAGTCAGATCATGTGTATCTGATGTACAACCAAGCATGTTCTCGGTTTCTCAATAGTCGTGCCAAACATCAACCAATGTTGAAAATTAAGGTTACAGTAGCATCGCTAGCACTCTCATCCGAGTACATACCGGTGCAGTTAAGAGGGTTTGGGGTCAGCACAATCAGCAATCTTCTTCAAAAACAAAGAGTTGGGTGA 2946 0.3829 MSFQVSHKINHVVLVCLVFVTSSTCSHHPSQIKYDVFVSFRGEDVRRGFLSHLIEAFSRKQIAFFVDDNILKGKELSEALLGAIEGSLVSLVIFSEDYASSRWCLLELEKIIECRKKNGQIVMPIFYKVDPSDVRHQRKTYGDAFVKHERNLCLTTVQSWRSALIESANLSGFHLSNFPDEAELVKKIVKSVGRTLNHVHQVNSKGLVGVGKRIADVESLLQLEATDVRMIGIWGMGGIGKTTIAQEVYNKLCFRYDSCCFLANVREESGRHGIISLKKKVFSTLLGEEHWEIETRNGLPESVERRLHRMKVLIILDDVDDSEQLEILARTDWFGSGSRIIVTTRDKHVLAKELANVYHVEALNFDESLRLFNLNAFKQKHLQAEFHELSKKVVDCAKGIPLALKFWGQRLLGKDKEIWESQLERQALHNKEVHDIIKLSYNDLEEDEKNIFLDIACFFYGLQLEVKYTGLLLKDRDYSVVAGFERLKDKALISISQENTGNEGIRSIVVNLLGMKQLHLKPQVFTKMNNLHFLNFYTAWTSSIFLDQLWGLYLPQGLKSLPNELRYLGWAHYPLESLPSNFSGENLVELHLPYSRVKKLWQEVPDLVNLKVLILHSSSRMKELLDFSKASNLEVIDLRFCVGLTSVHPSVFSLRKLEKLDLDGCSSLTSLRSNIHLDSLRYLSLHRCLALKDFSVTSKNMIRLDLELTSIKQLPPSIGSQSKLEKLNLAYTYIENLPESMKNLTRLRHLDLRYCRSLRSLPKLPPSIETLDVRECTSLENVRFPSIAEQWKENKKKILFWNCLKLDEHSLMAIETNAEINTMKFAQQHLSTPGDALGTYVYPGSQVPEWLMYKATHDDSITIAPHSSHLGYIFCFIVPEVPYGDTVLKLKISTEGEGGVEGDSMMVYLDRSHHGIKSDHVYLMYNQACSRFLNSRAKHQPMLKIKVTVASLALSSEYIPVQLRGFGVSTISNLLQKQRVG* 982
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00411 981 Pfam TIR domain 33 202 IPR000157 GO:0007165
Lapu10g00411 981 FunFam Disease resistance protein (TIR-NBS-LRR class) 30 198 - -
Lapu10g00411 981 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 781 IPR044974 GO:0006952
Lapu10g00411 981 Pfam Leucine Rich Repeat 586 604 IPR011713 -
Lapu10g00411 981 Gene3D - 28 198 IPR035897 -
Lapu10g00411 981 PRINTS Disease resistance protein signature 230 245 - -
Lapu10g00411 981 PRINTS Disease resistance protein signature 652 668 - -
Lapu10g00411 981 PRINTS Disease resistance protein signature 397 411 - -
Lapu10g00411 981 PRINTS Disease resistance protein signature 306 320 - -
Lapu10g00411 981 Gene3D Ribonuclease Inhibitor 699 831 IPR032675 -
Lapu10g00411 981 Pfam NB-ARC domain 220 432 IPR002182 GO:0043531
Lapu10g00411 981 SUPERFAMILY Toll/Interleukin receptor TIR domain 26 173 IPR035897 -
Lapu10g00411 981 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 455 IPR027417 -
Lapu10g00411 981 Gene3D - 199 360 IPR027417 -
Lapu10g00411 981 Gene3D - 362 445 IPR042197 -
Lapu10g00411 981 ProSiteProfiles TIR domain profile. 32 196 IPR000157 GO:0007165
Lapu10g00411 981 Gene3D Ribonuclease Inhibitor 482 698 IPR032675 -
Lapu10g00411 981 SMART till_3 33 170 IPR000157 GO:0007165
Lapu10g00411 981 SUPERFAMILY L domain-like 511 803 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lapu10g00411 Lapu-Chr10 6490712 6494111 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00411 30 762 WRKY Transcription Factor Family AT4G12020 31.218 1.90e-91 318
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00411 - - pvu:PHAVU_010G131900g 1620.14