Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00401 ATGGGAAGACGACCCTGCTGCCCCAAAGAGATCAACAAAGGTGCTTGGTCTCGAGAAGAAGATGAAACCCTCTCCAAATATGTTGCCATCCATGGAGAAGGAAAATGGCAGAAGGTTGCCCAAAATGCAGGTTTAAAGCGATGTGGAAAAAGCTGCAGACAAAGGTGGCTGAACTATCTCAAGCCTGGTATAAAAAGGGGTGACATCTCTGTGGATGAAGAAGATATGATTATCAGACTTCATCGTCTTCTTGGTAACAGATGGGCATTGATAGCAAAGAGGCTACCTGGACGAACAGACAATGAAATCAAGAACTACTGGAACACTAATCTGTCAAAGAAGTTACAGAAACCACCTACATCATCATCGTCTGTTTCTTCCCTTCAACACAAACGTCACGAAGAAGAGAAGATCAAACAAGTGCATGTAGCACCCGAAGCTCCACGCCCTAGGAGAGTTAGTGCAGTTGAATACAGTAAAATTATGGAGAATGGTGGTAATAGGTGTAGTACTACTCCCAGTGCCTCAAATAAAGTAGAGGGTAGTAGTGATGAAGCTTCTTTTAGTGATTTCCTCATCGATATTGATCAAAATCAGTTGTTGATTGCTGATGATTCCAACTCAAAGATCCCACAAATGGAGGAAGACCACAACAACAAACAGGTAGGCTTAACCAACAGTCCTTGCTCATCATCACCTTCTGATCATTGTCACCATCTCTTGCCAGAGAAATTTGACCCTCTCGAGACCCTTTTGGATGTGGAGCTCAAGAGGATGGCTTCCTTTCTTGGACTTGAAAATGATTGA 807 0.4312 MGRRPCCPKEINKGAWSREEDETLSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISVDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQKPPTSSSSVSSLQHKRHEEEKIKQVHVAPEAPRPRRVSAVEYSKIMENGGNRCSTTPSASNKVEGSSDEASFSDFLIDIDQNQLLIADDSNSKIPQMEEDHNNKQVGLTNSPCSSSPSDHCHHLLPEKFDPLETLLDVELKRMASFLGLEND* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00401 268 CDD SANT 70 111 IPR001005 -
Lapu10g00401 268 FunFam Transcription factor TT2 69 141 - -
Lapu10g00401 268 MobiDBLite consensus disorder prediction 113 127 - -
Lapu10g00401 268 SMART sant 12 62 IPR001005 -
Lapu10g00401 268 SMART sant 65 113 IPR001005 -
Lapu10g00401 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Lapu10g00401 268 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lapu10g00401 268 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Lapu10g00401 268 MobiDBLite consensus disorder prediction 128 146 - -
Lapu10g00401 268 CDD SANT 15 60 IPR001005 -
Lapu10g00401 268 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lapu10g00401 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Lapu10g00401 268 Gene3D - 10 66 - -
Lapu10g00401 268 FunFam MYB-related transcription factor 12 65 - -
Lapu10g00401 268 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Lapu10g00401 268 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lapu10g00401 268 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 206 - -
Lapu10g00401 268 Gene3D - 70 142 - -
Lapu10g00401 268 MobiDBLite consensus disorder prediction 113 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00401 Lapu-Chr10 6392035 6393506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00401 1 190 MYB Transcription Factor Family AT4G09460 45.729 3.55e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu10g00401 Myb_DNA-binding 7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00401 K09422 - gmx:547568 454.907