Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00398 ATGAGTAACTGGTTGGGGTTCTCTCTGACTCCACACTTGAGGATTGATGAAGAATTTGGGAGAGAAAACCAAGAGCCTGGAGGAGGAGAAGGAGGAGGAGGGTATCATCATCATCCTTCTTCTCACCCTCACTTGTCTGTTATGCCTTTGCGCTCTGATGGCTCTCTGTGTGTTGCTGACTCCTTCAGCCACTCTGCTGCCCCTCAAGAATGGAGATATGATAGTGCAATAGGTGGAGGGAATTCCAATGAAAAAGGTCCAAAGCTTGAGGACTTTTTGGGTTGCTACTCAAACTCCCCCAATAAAGTCTTTTGTCAAGATTCTCAACATGACCAAAACCAAAGCCAGAGCAATGTTTCCAAAATCAATGTTAATGTGGCACCAAACTTTTGCACCAATGCCGAGATTGAAACTGGGGATTGCCTCACAAACCCTTCTTCCTTGCTTCAATCTTTCCATGCATATAATGATAACCCGCATGCCCCTATCCAGACCAATGGGATGTACAAGTCCTGGTTGGCTCAAACTCAGTTTTCTGATGTAAAACCTTCAACTGAGGCAAATGGGTGTAATTTCCAATCACTGTCCCTCACTATGAGCCCCACCGTGCAAAATGGGGTGGGTGCAATTTCCTCTGTTCAAGCTATTGAGGACAATAGAAAACGGGCCATGGCGAAATCTCATGCTAGAGAACCAGTTCCTCGCAAATCTATTGACACTTTTGGGCAGAGAACATCTCAATACCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTGTGGGATAACAGTTGCAGAAAGGAAGGGCAAACAAGGAAAGGAAGGCAAGTCTACCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACATATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTATAGAGGTGTGACAAGGCACCATCAACATGGAAGGTGGCAGGCCCGAATAGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTAGCACTCAAGAAGAAGCTGCTGAAGCATATGATATTGCAGCAATCAAGTTCAGGGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTGAAGAGAATCTGCTCAAGTTCCACTCTCATTGCAGGAGATCTGGCAAAACGGTCCCCAAAAAAAGAATCACCAGCTGCTGCCGCTGCGGATGACATCAATACAAGCAGTTCGTCTGTGCCGACTCAGCCACCTCCTTTGGCAATAACTAATGGTGAACATTCTGATGAGTTGTCCAACATGATGTGGAATGCCAACAGTGATGAGCAAGCACATAATGAGAGTGCTAACATCAACAATGTCACTGAATCATCATCACAGCAGGTTTCTCCTAGCAACAAGGTTGGTTGTTTGAACCCTCAAAGCCCCCCCAAGTGTTCTGTGGGGCTACCCAATGAGTTTGGAGTGAGTGGAGCAGATTATGGACATGGGTACTTCAACCTGGATGGAGCAAAATATGATGATGGGAACAATGAAAACGACCACATGAGCAGCAGCAGGCTTGGAAATTTGGGACTTGTTAATCAAGTTCCCATGTTTGCTTTGTGGAATGAATGA 1734 0.4527 MSNWLGFSLTPHLRIDEEFGRENQEPGGGEGGGGYHHHPSSHPHLSVMPLRSDGSLCVADSFSHSAAPQEWRYDSAIGGGNSNEKGPKLEDFLGCYSNSPNKVFCQDSQHDQNQSQSNVSKINVNVAPNFCTNAEIETGDCLTNPSSLLQSFHAYNDNPHAPIQTNGMYKSWLAQTQFSDVKPSTEANGCNFQSLSLTMSPTVQNGVGAISSVQAIEDNRKRAMAKSHAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKKESPAAAAADDINTSSSSVPTQPPPLAITNGEHSDELSNMMWNANSDEQAHNESANINNVTESSSQQVSPSNKVGCLNPQSPPKCSVGLPNEFGVSGADYGHGYFNLDGAKYDDGNNENDHMSSSRLGNLGLVNQVPMFALWNE* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00398 577 FunFam AP2-like ethylene-responsive transcription factor ANT 246 315 - -
Lapu10g00398 577 MobiDBLite consensus disorder prediction 442 465 - -
Lapu10g00398 577 Gene3D AP2/ERF domain 349 409 IPR036955 GO:0003700|GO:0006355
Lapu10g00398 577 Gene3D AP2/ERF domain 246 315 IPR036955 GO:0003700|GO:0006355
Lapu10g00398 577 FunFam AP2-like ethylene-responsive transcription factor 348 409 - -
Lapu10g00398 577 Pfam AP2 domain 348 399 IPR001471 GO:0003700|GO:0006355
Lapu10g00398 577 Pfam AP2 domain 247 305 IPR001471 GO:0003700|GO:0006355
Lapu10g00398 577 MobiDBLite consensus disorder prediction 20 45 - -
Lapu10g00398 577 CDD AP2 348 409 IPR001471 GO:0003700|GO:0006355
Lapu10g00398 577 SMART rav1_2 247 319 IPR001471 GO:0003700|GO:0006355
Lapu10g00398 577 SMART rav1_2 349 413 IPR001471 GO:0003700|GO:0006355
Lapu10g00398 577 CDD AP2 246 315 IPR001471 GO:0003700|GO:0006355
Lapu10g00398 577 ProSiteProfiles AP2/ERF domain profile. 349 407 IPR001471 GO:0003700|GO:0006355
Lapu10g00398 577 SUPERFAMILY DNA-binding domain 348 409 IPR016177 GO:0003677
Lapu10g00398 577 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 84 487 - -
Lapu10g00398 577 ProSiteProfiles AP2/ERF domain profile. 247 313 IPR001471 GO:0003700|GO:0006355
Lapu10g00398 577 MobiDBLite consensus disorder prediction 428 465 - -
Lapu10g00398 577 SUPERFAMILY DNA-binding domain 246 315 IPR016177 GO:0003677
Lapu10g00398 577 PRINTS Ethylene responsive element binding protein signature 248 259 IPR001471 GO:0003700|GO:0006355
Lapu10g00398 577 PRINTS Ethylene responsive element binding protein signature 389 409 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00398 Lapu-Chr10 6350715 6354277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00398 1 432 AP2-EREBP Transcription Factor Family AT1G72570 50.840 4.93e-140 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lapu10g00398 AP2 4.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00398 K09285 - gmx:100805489 978.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00398 10 6350715 6354277 Lapu10g00398 10 6350715 6354277 ECH