Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00396 ATGATGAGTGCAAGTGCAAGTGCGAGAAATAGGTCTCCTTTCACACCTACTCAGTGGCAGGAACTTGAGCAACAGGCTCTTGTTTTCAAATACATGGTCACTGGAACACCTATCCCACCAGATCTCATCTACTCTATTAAAAGAAGTCTAGACTCTTCAATTTCTTCAAGACTCTTCCCACACCACCCAATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGCGATGCTCAAAGGAAGCATATCCAGACTCCAAGTACTGTGAAAGACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCAGCAACAAGCACCGCCACAAACACCTCCCAAACAATCCCATCTTATACCAGAAACCTTTCCTTGAACAACCCCACCATAACTCCACCCTCTTTCCCTTTCTCTCCTTTGCCCTCTTCTATGCCCTGTGAGTCCCAACCTTTTTCCCAATCCTACCAAAACCCTTCTCTCAATCCCTTCTTCTACGCCCAATCAGCCTCCTCTAGACCCCCAGATTCTGATTTTCCACCTCAAGATGCCACTACCCACCAGCTATTCATGGACTCTGGGACTTATTCTCATGATGAGAAGGATTATAGCAGGCATGTTCATGGAATAAGGGAAGATGTGGATGAGAGAGCTTTCTTCCCAGAAGCTTCAGGATCAGCGAGGAGCTATACAGACTCGTATCAACAACTATCAATGAGCTCCTACAAGTCCTATTCGAACTCCAACTTTCAGAACATCAATGATGCCACCAACCCAAGACAGCAAGAACAACAACACTGCTTTGTTTTGGGGACTGACTTCAAATCAACAAGGCCAAGCAAAGAGAAAGAAGCTGAGACAACAAGCCAGAGACCCCTTCACCGTTTCTTTGGGGAGTGGCCACCAAAGAACACAGATTCATGGTTAGATCTTGCTTCCAACTCCAGAATCCCAACCGGTAACAACGATCATGCCGCTTCCCTACTCTCATTATCATACCCTTTTTAA 1065 0.4601 MMSASASARNRSPFTPTQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDSSISSRLFPHHPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVSSATSTATNTSQTIPSYTRNLSLNNPTITPPSFPFSPLPSSMPCESQPFSQSYQNPSLNPFFYAQSASSRPPDSDFPPQDATTHQLFMDSGTYSHDEKDYSRHVHGIREDVDERAFFPEASGSARSYTDSYQQLSMSSYKSYSNSNFQNINDATNPRQQEQQHCFVLGTDFKSTRPSKEKEAETTSQRPLHRFFGEWPPKNTDSWLDLASNSRIPTGNNDHAASLLSLSYPF* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00396 354 Pfam QLQ 13 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lapu10g00396 354 Pfam WRC 79 121 IPR014977 -
Lapu10g00396 354 MobiDBLite consensus disorder prediction 161 205 - -
Lapu10g00396 354 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lapu10g00396 354 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Lapu10g00396 354 MobiDBLite consensus disorder prediction 111 205 - -
Lapu10g00396 354 PANTHER GROWTH-REGULATING FACTOR 5 12 334 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lapu10g00396 354 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lapu10g00396 354 MobiDBLite consensus disorder prediction 295 315 - -
Lapu10g00396 354 MobiDBLite consensus disorder prediction 295 309 - -
Lapu10g00396 354 MobiDBLite consensus disorder prediction 119 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00396 Lapu-Chr10 6329486 6330942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00396 1 318 GRF Transcription Factor Family AT3G13960 40.052 2.58e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lapu10g00396 WRC 1.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00396 - - gmx:100806024 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00396 10 6329486 6330942 Lapu10g00396 10 6329486 6330942 ECH