Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00390 ATGATCATGGAACCAAATCCGACATCAGATCATAGTCTGGACTGGTTTGAAGGTTCTGTTTCTTTCTTTCCACTTCCACCATTCTTAGATTATCCATATAACTCTAGTGACATCCAAGAGTATCAGCTGTGGGATCAAGACATAAGCAGCCACTATCAAACTGATGCTAATACCAGTTCCCCTAATGCCACCAACATTGCTACTAACATAGCACCCCCTGAGCCTTGTGGTTCTAACAATCTTCCACCCTCTGATTTTCCCAAGAAAAGAAGTGCCATTGATGATTCAAGTGTCAGGCCACAGCAAAACCACAAGCACAAGAAAATCAAGAGCAAACCAATGAATAATGAAGCAGATAGTGGAGACGCAGAAGGGAGGACAACAGTTAGAAAACCTGGTGGGAACAAGAGAGGTGCTACTAAGGGTATAGCAAATAACTGCAACAAGGAAGGAAGGTGGGCTGAACAGTTGCTCAACCCTTGTGCTGCAGCCATAACTGGTGGAAATCTGAATCGTGTGCAACATCTCTTGTATGTTCTCCATGAGTTAGCATCACCTACTGGTGATGCTAACCACAGGCTTGCAGCCCATGGTCTTAAAGCACTCACACACCATTTATCATCTTCTCTAGCATCTGCCTCTTCAGGGTCCATAACTTTTGCATCTACTGAGCCACGGTTCTTCCAAAAGACACTGCTCAAGTTCTATGAGGTTAGCCCTTGGTTTTCTTTTCCAAACAACATAGCAAATGCTTCCATCCTTCAAGTTCTTGGGGAAGACAATGACAACTCACGCACCCTTCACATCCTTGACATTGGGGCCTCTCATGGCATGCAATGGCCAACGTTTCTAGAGGCCTTGAGTCGCAGACCTGGTGGTCCTCCTCCACTGGTTCGCCTTACAGTGGTCACTGCTTCTTCCACTGAAATTGACACCCCATTTTCAATTGGTCCTCTTGGTGATAACTTCCCATCTAGACTCCTTGGTTTTGCTCAGTTAATGAACGTTAATTTGCAGATTAAAAGGCTAGATAATAGTCCATTACATACATTGAGTGCTCAGAGTGTTGACACCTCCCCGGATGAAATCTTTGTTGTGTGTGCACAGTTTAGACTGCATCAGTTAAGTCACAACACCACTGACGAAAGGAGAGAGTTTCTGAAAGTGCTGAGGAACATGGAGCCCAAAGGGGTGATACTAAGTGACAACAACATGGAATGTTGTTGCAATTGTTGTGGGGATTTTGCCACCGGGTTCTCTCGAAGGGTGGAGTACTTGTGGCGGTTTTTGGACTCAACAAGCTCAGCGTTCAAGGGTCGTGAGAGTGATGAAAGGAGAGTGATGGAAGGTGAGGCGGCAAAGGCATTGACAAACCAGCGAGAGATGAATGAAGGGAAGGAAAAATGGTGTGAGAGAATGAAAGAAGCAGGGTTTGAGGGGGAAGTGTTTGGTGAGGATGCAATAGATGGAGGTAGAGCTTTGCTGAGAAAGTATGATAGTAATTGGGAGATGAAAGTTGAAGATGACAATAGAAGTGTAGGATTATGGTGGAAGGGGCAACCTGTTTCTTTCTGTTCCTTGTGGAAGCTGGATGGGAATGATCAGAGCTCAACATTCACATCGTGA 1626 0.4514 MIMEPNPTSDHSLDWFEGSVSFFPLPPFLDYPYNSSDIQEYQLWDQDISSHYQTDANTSSPNATNIATNIAPPEPCGSNNLPPSDFPKKRSAIDDSSVRPQQNHKHKKIKSKPMNNEADSGDAEGRTTVRKPGGNKRGATKGIANNCNKEGRWAEQLLNPCAAAITGGNLNRVQHLLYVLHELASPTGDANHRLAAHGLKALTHHLSSSLASASSGSITFASTEPRFFQKTLLKFYEVSPWFSFPNNIANASILQVLGEDNDNSRTLHILDIGASHGMQWPTFLEALSRRPGGPPPLVRLTVVTASSTEIDTPFSIGPLGDNFPSRLLGFAQLMNVNLQIKRLDNSPLHTLSAQSVDTSPDEIFVVCAQFRLHQLSHNTTDERREFLKVLRNMEPKGVILSDNNMECCCNCCGDFATGFSRRVEYLWRFLDSTSSAFKGRESDERRVMEGEAAKALTNQREMNEGKEKWCERMKEAGFEGEVFGEDAIDGGRALLRKYDSNWEMKVEDDNRSVGLWWKGQPVSFCSLWKLDGNDQSSTFTS* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00390 541 MobiDBLite consensus disorder prediction 52 75 - -
Lapu10g00390 541 ProSiteProfiles GRAS family profile. 145 529 IPR005202 -
Lapu10g00390 541 MobiDBLite consensus disorder prediction 52 143 - -
Lapu10g00390 541 Pfam GRAS domain family 155 529 IPR005202 -
Lapu10g00390 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 131 517 IPR005202 -
Lapu10g00390 541 MobiDBLite consensus disorder prediction 112 131 - -
Lapu10g00390 541 MobiDBLite consensus disorder prediction 88 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00390 Lapu-Chr10 6281202 6282827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00390 1 529 GRAS Transcription Factor Family AT3G13840 51.095 1.87e-172 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lapu10g00390 GRAS 5.5e-75 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00390 - - vun:114166202 986.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00390 10 6281202 6282827 Lapu10g00390 10 6281202 6282827 ECH
Lapu10g00390 10 6281202 6282827 Lapu5g00279 5 2276458 2278415 PCT