Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00389 ATGTCCCATCAGGAGCAAGCCTTAGTGTCCCTTCTCTCCCAGCTCGCCCTTTCCTTCGACGGCGCCGTTTTGGGCTTCGCCTTGGCCTACGCCGCCCTCCGCACCCTCTTCAAATTCTCCGCTACCTCCGCCGCCCTCCGTAAGCTCCGCCGCGCACCTTCCCTCTCCGTTTCCGACCTCCGATCACTTCTCGCCGATACTCCCTCTGACGCCGACTCTAACTCCGACGGTGGCACAATCGTAATTGTCCGCGGCACCGTTGATGCCAAGTCCGCAGTCGATGGGTCCTGGAAAACCCTCAGACCCGGCGTCTTGGTTTCTCGCGAGTCCGGTGATAAGGGCGTCATCCTTCAAAGAACTCAAACGTGTATATACAATGAATGGAAAGGCTTATTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCTTGGAGACAGCAAGAGTCTACATCTTTAAGGAAGGTGCCTTTTGTTCTAATTGATGTTGGACGGCGGCCATCTACTGAGTATGTTGTTGTCAACATGGATGGCTCAAGACATCCGTTACCTCTGACAACAGTTTATCATAAATTGCAACCAATAAATGCTTCTCCTTATACTTTCTTGCAAGCACTTTTTGGGCATGAATATCCGGTCGGACTGCTAGATGAAGAGAAAATACTTCCCTTGGGGAAGGATATTACTGCTGTTGGCCTTGGCACTTTAAATAATGGAGTTGCTGAAATTAAGTCGTGCAAAGATCTACCATATTTTCTATCTGACTTGAGTAAAGATCAGATGATAGTGGATCTTTCCATCAAAACGAAAATACTGTTTTGGGGTGGCATTGCTCTCGGTTCAATGTCAGTTGGGATCCTTGGCTATGCTGTTGTGAGGAACTGGAATAAGTGGAAACAGTGGAAGCTACAGAGGCAGCTCCAACAACAAAGGCAAGCAGTGACTGATGTTGAACCTCAGGTGGATGATGAGATTGAAGATGTTCCAGATGGACAATTATGTGTTATATGTCTGATGAGGAGAAGGCGTTCTGTCTTCATCCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTTGAACGTGAAGTGGCACCTAAATGTCCTGTTTGTCGTCAGGAGATTCGAAATTCAGTGCGGATTTTTGAATCATGA 1164 0.4794 MSHQEQALVSLLSQLALSFDGAVLGFALAYAALRTLFKFSATSAALRKLRRAPSLSVSDLRSLLADTPSDADSNSDGGTIVIVRGTVDAKSAVDGSWKTLRPGVLVSRESGDKGVILQRTQTCIYNEWKGLFGWTSDLRAIFARSWRQQESTSLRKVPFVLIDVGRRPSTEYVVVNMDGSRHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKDITAVGLGTLNNGVAEIKSCKDLPYFLSDLSKDQMIVDLSIKTKILFWGGIALGSMSVGILGYAVVRNWNKWKQWKLQRQLQQQRQAVTDVEPQVDDEIEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRNSVRIFES* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00389 387 Pfam Zinc finger, C3HC4 type (RING finger) 333 380 - -
Lapu10g00389 387 CDD RING-HC_SPL2-like 330 376 - -
Lapu10g00389 387 Pfam E3 Ubiquitin ligase 141 287 IPR022170 GO:0004842|GO:0006996|GO:0016567
Lapu10g00389 387 SMART ring_2 335 374 IPR001841 -
Lapu10g00389 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 387 IPR044247 GO:0004842
Lapu10g00389 387 SUPERFAMILY RING/U-box 334 381 - -
Lapu10g00389 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 387 IPR013083 -
Lapu10g00389 387 ProSiteProfiles Zinc finger RING-type profile. 335 375 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00389 332 384 C3H Transcription Factor Family AT3G06140 39.623 2.42e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00389 K15688 - gmx:100811939 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00389 10 6273918 6280697 Lapu10g00389 10 6273918 6280697 ECH