Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00371 ATGCAGAATCACAGGCTGAAACAGCAGCAGCAACAACAACAAGCTCTGATGCAGCAAGCTCTTCTTCAACAACAGTCTCTCTACCACCCTGGCCTCCTTGCTCCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTCGGGAACATCCATACACAGGTAACTGAACCGCTTTTGCAAGAAGTTTTTGCTGGTACTGGCCCAGTTGAAGGTTGTAAACTTATCAGAAAGGAGAAGTCATCCTATGGATTCATTCATTACTTTGATCGCAGATCGGCTGCTCTTGCCATATTATCTCTCAATGGAAGACATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCTAGTGGTCAGCGAGAGGATACGTCAGGTCATTACAACATATTTGTTGGTGATCTAAGTCCTGAGGTTACTGATGCTACGCTGTTTGCTTGCTTTTCTGTGTACACCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGAGGATTTGGATTTGTTTCATTCCGCAGTCAACAGGATGCACAAAGCGCTATAAATGATTTGACTGGTAAATGGCTTGGAAGTAGACAAATACGCTGTAACTGGGCAACAAAAGGTGCTGGTGGTATTGAAGAGAAGCAAAATTCAGATGCAAAAAGTGTGGTGGAACTAACAAATGGCTCATCTGCTTCGCATGAATTGACCAACATGGTTTATCCTATTTGTACAGAAGATGGTAAAGATGTATCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACTGTCTATGTGGGTAACCTTGCTTCAGAGGTAACTCAACTTGATCTCCATCGCCACTTCCATTCTCTTGGGGCTGGAGTGATAGAGGAGGTTCGGGTCCAGCGTGACAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATGCCCAGTCTCTTCTTCTTGGAAAACAAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCATCTCTACCTGGCCTGTCTGCAACCGATATTTTGGCTTACGAGCGACAGCTAGCAATGAGTAAGATGGGGAGCGTCCATGCGTTGATGCATCCCCAGGGCCAACATCCTCTTAAACAAGCAGCAGCTATTGGAGCCAGCCAAGCAATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTAA 1308 0.4602 MQNHRLKQQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYTSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDAKSVVELTNGSSASHELTNMVYPICTEDGKDVSNSDAPENNPQYTTVYVGNLASEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSLLLGKQIKCSWGSKPTPPGTASNPLPPPAAASLPGLSATDILAYERQLAMSKMGSVHALMHPQGQHPLKQAAAIGASQAIYDGGFQNVAAAQQMMYYQ* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00371 435 FunFam Oligouridylate-binding protein 1C 255 355 - -
Lapu10g00371 435 SUPERFAMILY RNA-binding domain, RBD 135 222 IPR035979 GO:0003676
Lapu10g00371 435 SMART rrm1_1 142 215 IPR000504 GO:0003723
Lapu10g00371 435 SMART rrm1_1 277 347 IPR000504 GO:0003723
Lapu10g00371 435 SMART rrm1_1 57 126 IPR000504 GO:0003723
Lapu10g00371 435 SUPERFAMILY RNA-binding domain, RBD 40 134 IPR035979 GO:0003676
Lapu10g00371 435 FunFam oligouridylate-binding protein 1-like isoform X2 139 234 - -
Lapu10g00371 435 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 45 354 - -
Lapu10g00371 435 SUPERFAMILY RNA-binding domain, RBD 264 358 IPR035979 GO:0003676
Lapu10g00371 435 Gene3D - 257 355 IPR012677 -
Lapu10g00371 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 219 IPR000504 GO:0003723
Lapu10g00371 435 FunFam oligouridylate-binding protein 1B-like isoform X2 1 138 - -
Lapu10g00371 435 Gene3D - 140 221 IPR012677 -
Lapu10g00371 435 Gene3D - 1 139 IPR012677 -
Lapu10g00371 435 CDD RRM1_PUB1 58 128 - -
Lapu10g00371 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 351 IPR000504 GO:0003723
Lapu10g00371 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 335 IPR000504 GO:0003723
Lapu10g00371 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 213 IPR000504 GO:0003723
Lapu10g00371 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 124 IPR000504 GO:0003723
Lapu10g00371 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 130 IPR000504 GO:0003723
Lapu10g00371 435 CDD RRM2_PUB1 140 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00371 Lapu-Chr10 6029779 6037508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00371 51 339 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 2.53e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00371 K13201 - gmx:100781227 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00371 10 6029779 6037508 Lapu10g00371 10 6029779 6037508 ECH