Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00367 ATGGCGACCAAAGATTCTCCTATGGAACTGCACGAAATCACCAGCGAATCCGAAGGATCCGACCCGCATTCCGACAGGGAAGATTCTGGAGAAGACCCCGATTACGACGTGCTCGAAGAAACTCATAGCAAATTCTCAAACCTCTCACTTAAGCACAAGGCAAAAGCGCGCTTTGTCGAAGAGAAGGGTCGAGTTGAGGAAGTGTTGGTGGTCACTGCATCTGTAAATGATGGAGATAATTTTGGGAAAGTTCAAAATTTAATCGAAGAGGGATTGCTGGAGAAATTGAAAGTGGATGAGTGCAAGTTGTATTTGAGGAAGAATGGTCTGAGGCTAACTGGAAACAAAGACACACTTATACAACGCATAAGGGAGCACTTGGAGATTTTAAATGGAGGGGAGAAGAAGTATCCACCTTCTAGCTTTGTGTTGAATTGTAAAGGTGATGCATGCACTGGTGATGTTGTTTTGTTTGAGCAAAATGTCTATGAAATGTTCAACATCGCATCCAGGAGTGCCAGTGGTCCACCTTGTGGCAAAAGGATTGTTGCGGGCCGAATAGTGAAAGAAAGCTATGGTGCTGCTAAACAACAGCATACATTTACGATTGAAGTACTCTGGAGTAAAGGAGAAAAGCCTCTCCCTCCCCTTTACCCCCTACTGATTAAGGGTCGAAACCTTTACAGGCTGCAGACTTTGAGACAGAAGTGGGAAGATGAAGCAAAAAGGCAGAAAATATTGATGGAAAAACACTCGAGGGGATCTCTTGCTAGGGCAGATAGAGAAGCAAGGATACAAGAAAAGGAGCAGAGGAAAAATACTAAGGAAAATAGGGTCTCCAAAAAAGCAAGGAATTCACAATATCAATCTCAAGGAAGAAATGTAGTGATTAATCCAGAAAAACCCGAATTTCCATCTCGAAATTCAGGTTTATCTGCCAATATAATGAACGAAACATCATTTGCTGTTCACAATATGCATAATCAACCAGCTTGGAATCCCACAGGTGACTGTAGGAATAATTTTAATATTGGTCGTGTGTGGAGAGCTGAACTTGGTGCAAACTATAACTATGCAGACCCCCATTTCAGAGAAAACCTACCTAGTATTGTGAACTGCCATCCTGACATGGCTGAGAAGACAACTGGATTTACAATGGGCACTCATCATAGGATGCCCTTAACAGATGCAAACCAACCTCACCCATTTATGGCCTCCAACAGAGAAAGCTATAAGCTGAATCAGGTGTGTCAACACTATTCCCGTGGGAGGTGCTATTTTGGGAACAACTGCAAATTCTTGCATGATGCATGA 1314 0.4285 MATKDSPMELHEITSESEGSDPHSDREDSGEDPDYDVLEETHSKFSNLSLKHKAKARFVEEKGRVEEVLVVTASVNDGDNFGKVQNLIEEGLLEKLKVDECKLYLRKNGLRLTGNKDTLIQRIREHLEILNGGEKKYPPSSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSASGPPCGKRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYRLQTLRQKWEDEAKRQKILMEKHSRGSLARADREARIQEKEQRKNTKENRVSKKARNSQYQSQGRNVVINPEKPEFPSRNSGLSANIMNETSFAVHNMHNQPAWNPTGDCRNNFNIGRVWRAELGANYNYADPHFRENLPSIVNCHPDMAEKTTGFTMGTHHRMPLTDANQPHPFMASNRESYKLNQVCQHYSRGRCYFGNNCKFLHDA* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00367 437 MobiDBLite consensus disorder prediction 250 308 - -
Lapu10g00367 437 Gene3D - 403 437 - -
Lapu10g00367 437 SUPERFAMILY SAP domain 83 128 IPR036361 -
Lapu10g00367 437 PANTHER SAP DOMAIN-CONTAINING PROTEIN 14 294 - -
Lapu10g00367 437 Coils Coil 258 285 - -
Lapu10g00367 437 SUPERFAMILY CCCH zinc finger 412 436 IPR036855 GO:0046872
Lapu10g00367 437 ProSiteProfiles Zinc finger C3H1-type profile. 411 437 IPR000571 GO:0046872
Lapu10g00367 437 MobiDBLite consensus disorder prediction 250 282 - -
Lapu10g00367 437 MobiDBLite consensus disorder prediction 1 36 - -
Lapu10g00367 437 ProSiteProfiles SAP motif profile. 93 127 IPR003034 -
Lapu10g00367 437 SMART sap_9 93 127 IPR003034 -
Lapu10g00367 437 Pfam SAP domain 93 127 IPR003034 -
Lapu10g00367 437 Pfam CCCH-type zinc finger 416 436 IPR041367 -
Lapu10g00367 437 Gene3D SAP domain 83 139 IPR036361 -
Lapu10g00367 437 MobiDBLite consensus disorder prediction 9 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00367 Lapu-Chr10 5971503 5974601 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu10g00367 SAP 1.1e-09 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00367 - - gmx:100815642 619.002