Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00364 ATGGCTGATTCTTTTTCCTTTGAGGGTGACTCCTTCTCGAGTCACCAGAGACGACACTACCCAACACCAGCGAGTTATCACAGTGTGTCTGGCTCTGGCTCTTTCATACCATCCAGCTTTCATAGCGAGGCCACTTCCACAACCAGACGAGCTCGCCGCAACCGAGTTCCTGCCACACCCTTCGCTTCAGATGATGACCATTCATGGCAAGAAGAGGTTTCATGGAAGTTTGAGGCCACCGGGTGGCACGATTATAGCACAAACTTTGGTTCTCTTCTGACTCCATGGCCAGCTAGCTCCCCTTCTGATCACAGCCGTATATTTCGACGATCAGCCAATGACTACTACCTTTCAAGAACAAGTAGATTCAGAGGTCTCGCAAGCTCTTCTTATGAACATTCTGGCTATGGTAGAGTTGAACTTAAGAGTTATGTTGCTAGGGACAATGATCATAGTTACTTTGATCAGCGTAGTCAGCCTCATGAATTATCCACATCAGGGTTCATCCAAGAGAAGAGTAGTAGAAAAAGTAAGAGTAGTCCATTGGCCGAGGAAGATGAGCTTAGTATGATAGATTATAGCATAACAGAGGAACATGTAATTTCACCTCATGGGAATGGTCATGGTCTTGAATCCCCATATTTTAAACATGGTCATGGTGATTATGGTGGGAACCGTTATGTTAGTCATGGACTACCATCACATGATGGTAGCCATCTTTATGGAAGTGGTGGGGGTTATACTTATAGTCACCATGACATGGAGAAGTATTCAGGATATGATGAGGAAGGTGAGGAGGATATTGATGAGGAAGATGCAAGTCCTCCAAAGGCTGTTGGACTGTTCAGCTTGTTTAGGTACTCAACAAAGTGGGATTGGATGCTTGTGTTTGTGGGGTGTTTAGGGGCCCTCATAAATGGAGGATCACTTCCATGGTACTCTTATCTTTTTGGAGACTTGGTCAATAAGATTTCAGAAGCTGACAAGGACAAAAAACAGATGATGAAGGATGTAGAGCAAATATGCCTATTTATGGCTGGGCTAGCTGCTGTTGTGGTAGTTGGAGCATATTTGCAGATCACATGTTGGAGGTTAGTGGGGGCGCGATCTGCACAAAGAATTAGAACTGAGTATCTAAGAGCAGTTCTTAGACAGGACATTACTTTCTTTGATACAGATATCAACACCGGTGATATTATGCATGGAATTGCCAGCGATGTTGCACAGATTCAAGAAGTTATGGGAGAGAAGATGGCCCACTTCATTCATCATATATTTACATTCATATGTGGATACGCAGTTGGGTTTAAAAGATCATGGAAGGTCTCTCTTGTGGTATTCTCAGTCACTCCATTGACAATGTTCTGTGGCATGGCTTACAAAGCACTTTATGGTGGCCTAACAGCAAAAGAGGAAGCTTCTTATAGGAAAGCTGGTAGCATTGCGGAGCAGACCATAAGTTCAATCAGGACAGTGTTTTCATTTGTTGCAGAAAGCCAATTAGCTGGAAAATATGCTGAACTACTGCAGCAATCAGCTCCAATAGGGGCAAAAGTTGGTTTTGCTAAAGGTATAGGCATGGGTGTGATCTACTTAATAACCTATTCAACATGGGCGCTGGCATTCTGGTATGGCTCCGTATTAATTGCCAAGAATGAACTTGATGGAGGTTCAGCTATTGCTTGTTTCTTTGGTGTCAATGTTGGGGGAAGAGGATTGGCACTGGCACTTTCATATTTTGCACAATTTGCACAAGGGACTGTTGCAGCAAGCCGTGTATTCTATATTATAGAGAGAATCCCTGAGATTGATCCCTATAGCCCTGAGGGTAGGAAGCTTTCTGGTGTTCGTGGAAGGATTGAGTTAAAAAGTGTCAGCTTTGCATATCCATCTCGTCCTGATTCTCTGATACTTCATTCCCTTAATTTGATATTACCATCTTCAAAATCTGTGGCATTAGTTGGTGCCAGTGGTGGGGGAAAGTCCACTATCTTTGCTCTCATAGAGAGGTTTTATGACCCTACTGAAGGGATTATTACCTTGGATGGTCATGATTTGAGGACATTGCAAGTAAAGTGGCTACGTGATCAAATTGGGATGGTTGGTCAGGAGCCAATTCTCTTTGCCACATCTATACTGGAAAACGTGATGATGGGGAAAGATAATGCCACAAAGGAAGAGGCAATTGCTGCTTGCATTGCTGCTGATGCTCATAGTTTCATCTCTAGCCTACCACTAAGCTATGACACTCAGGTGGGAGATAGGGGTACAAAACTCTCCGGAGGTCAAAAGCAGAGAATTGCATTGGCTCGAGCAATGATCAAAGATCCTAAGATCCTTCTTCTAGATGAACCTACTAGTGCTCTTGATGCTGAGTCAGAGTCTGCCGTCCAACGGGCAATTGACAAGATTTCTGCTGGCCGAACAACCATTGTGATTGCTCATAGGATAGCAACAGTGAAGAATGCTCATACCATTGTGGTTCTTGAACATGGTTCTGTCACTGAGATTGGTGACCATCGCCAGCTTATGTCAAAAGCAGGAGCATACCACAACCTTGTCAAGCTTGCTACCGAAGGCATTTCAAAACCTCTAGGTATAGAGAATGACATACGAAAAGCCAATGACTTATCCATCTATGATAAATCTGTTGCTGCTTTATCAGGATCAAGATATGTAGTTGATATCCCTAGGTCTAAAGACTTATCTATGCATGAGGAGGAGAAACAAGAAGACATGGAAGATGATGAACGAGAGATGAAGGCAAAAAAATACAGACTTTCAGAAGTATGGAAACTACAAAAGCCCGAGCTTGTGATGCTATTTTCAGGACTTATTCTGGGAATGTTCGCTGGTGCTATTCTGTCGCTTTTCCCATTGGTTTTAGGCATATCCTTGGGAGTATATTTTGGTCATGACACTCACAAGATGAAAAGAGATGTTGCCCACCTTTGTTTTACACTTGTTGGCCTTGGATTTGGTTGCATACTTTCCATGACAGGACAACAAGGTTTGTGTGGTTGGGCTGGATCAAAGCTGACACAAAGGGTTAGAGACATCTTGTTTCAATCCATACTGAAACAAGAACCTGGGTGGTTTGACTTTGAAGAAAACTCTACGGGAGTGTTGGTATCAAGGCTCTCATTAGACTGTGTTAGTTTTCGATCAGTACTTGGTGACAGATTCTCAGTCCTTCTTATGGGGTTGAGTTCAGCAGCTGTTGGCCTTGGGGTGTCCTTTGCCTTCAATTGGAGACTAACGCTTGTAGCAGCTGCTGTAACTCCTTTTGCACTTGGTGCAAGCTACATAAGCTTGATCATAAACATTGGACCGCGAGTGGACAACGACTCTTATGCCAAAGCTAGTAACATTGCTTCTGGTGCAGTGTCGAACATAAGAACAGTTACCACATTTTCTGCCCAGGAACAGATAGTTAAGTCCTTTGATAGAGCTCTATCTGAACCTAGAAGAAATTCATTACGAAGTTCACAACTTCAAGGTCTTATGTTTGGGTTGTTTCAAGGTTCCATGTATGGAGCATACACCTTAACACTTTGGTTTGGCGCATACCTTCTAGAGCATGACAAGGCAAAACTTGGAGACGTGTTTAAGATCTTTCTCATTCTTGTTCTGAGCTCATTTTCTGTGGGACAACTAGCTGGTTTGGCACCAGATACTTCTATGGCAACTACAGCAATTCCTGCAGTTCAAGATATCATAAAACGCAGGCCACTGATTGACAATGATAGAACAAAAGGTAGAAAAGTAGACAGATCAAAGGCATTCCACATAGAATTCAAGATGGTGACATTTGCATACCCATCTAGGCCAGAAGTAAATGTGTTGAGGGACTTTTGTTTAAAGGTCAAAGGTGGAAGTACTGTGGCCTTGGTAGGACCAAGTGGATCAGGGAAGTCAACGGTCATATGGTTGACGCAGAGGTTTTATGATCCTGACCAAGGAAAGGTGATGATGAGTGGGATAGATTTGAGGGAGATTGATGTGAAGTGGTTGAGGAGGCAAATGGCTTTGGTGGGTCAAGAACCTGCACTGTTTGCTGGGAGCATAAGGGACAATATTGCATTTGGGGACCCAAATGCTTCATGGACTGAAATTGAAGAGGCTGCAAAGGAGGCTTACATCCACAAGTTCATCGGTGGCCTTCCTCAGGGTTACGAGACACAGGTTGGTGAAAGTGGGGTCCAGTTATCAGGTGGCCAGAAACAAAGAATTGCTATTGCAAGGGCCATATTGAAGAAATCGAGGGTTCTTTTGCTTGATGAAGCAAGCAGTGCCTTGGACTTGGAATCAGAGAAGCACATCCAAGAAGCCCTTAAAAATGTTGCCAAAGAAGCAACAACCCTAATTGTTGCTCACCGTCTTTCCACAATCAGAGAAGCTGATAAGATTGCAGTTATGAGAGATGGGGAAGTGGTGGAGTATGGGAGCCATGACGCTCTCATGGCTTCAACTCAAAATGGCTTGTATGCTAGCCTAGTTCGAGCTGAGGCTGAAGCCAATGCCTTTTCCTGA 4533 0.4366 MADSFSFEGDSFSSHQRRHYPTPASYHSVSGSGSFIPSSFHSEATSTTRRARRNRVPATPFASDDDHSWQEEVSWKFEATGWHDYSTNFGSLLTPWPASSPSDHSRIFRRSANDYYLSRTSRFRGLASSSYEHSGYGRVELKSYVARDNDHSYFDQRSQPHELSTSGFIQEKSSRKSKSSPLAEEDELSMIDYSITEEHVISPHGNGHGLESPYFKHGHGDYGGNRYVSHGLPSHDGSHLYGSGGGYTYSHHDMEKYSGYDEEGEEDIDEEDASPPKAVGLFSLFRYSTKWDWMLVFVGCLGALINGGSLPWYSYLFGDLVNKISEADKDKKQMMKDVEQICLFMAGLAAVVVVGAYLQITCWRLVGARSAQRIRTEYLRAVLRQDITFFDTDINTGDIMHGIASDVAQIQEVMGEKMAHFIHHIFTFICGYAVGFKRSWKVSLVVFSVTPLTMFCGMAYKALYGGLTAKEEASYRKAGSIAEQTISSIRTVFSFVAESQLAGKYAELLQQSAPIGAKVGFAKGIGMGVIYLITYSTWALAFWYGSVLIAKNELDGGSAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFYIIERIPEIDPYSPEGRKLSGVRGRIELKSVSFAYPSRPDSLILHSLNLILPSSKSVALVGASGGGKSTIFALIERFYDPTEGIITLDGHDLRTLQVKWLRDQIGMVGQEPILFATSILENVMMGKDNATKEEAIAACIAADAHSFISSLPLSYDTQVGDRGTKLSGGQKQRIALARAMIKDPKILLLDEPTSALDAESESAVQRAIDKISAGRTTIVIAHRIATVKNAHTIVVLEHGSVTEIGDHRQLMSKAGAYHNLVKLATEGISKPLGIENDIRKANDLSIYDKSVAALSGSRYVVDIPRSKDLSMHEEEKQEDMEDDEREMKAKKYRLSEVWKLQKPELVMLFSGLILGMFAGAILSLFPLVLGISLGVYFGHDTHKMKRDVAHLCFTLVGLGFGCILSMTGQQGLCGWAGSKLTQRVRDILFQSILKQEPGWFDFEENSTGVLVSRLSLDCVSFRSVLGDRFSVLLMGLSSAAVGLGVSFAFNWRLTLVAAAVTPFALGASYISLIINIGPRVDNDSYAKASNIASGAVSNIRTVTTFSAQEQIVKSFDRALSEPRRNSLRSSQLQGLMFGLFQGSMYGAYTLTLWFGAYLLEHDKAKLGDVFKIFLILVLSSFSVGQLAGLAPDTSMATTAIPAVQDIIKRRPLIDNDRTKGRKVDRSKAFHIEFKMVTFAYPSRPEVNVLRDFCLKVKGGSTVALVGPSGSGKSTVIWLTQRFYDPDQGKVMMSGIDLREIDVKWLRRQMALVGQEPALFAGSIRDNIAFGDPNASWTEIEEAAKEAYIHKFIGGLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSRVLLLDEASSALDLESEKHIQEALKNVAKEATTLIVAHRLSTIREADKIAVMRDGEVVEYGSHDALMASTQNGLYASLVRAEAEANAFS* 1511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00364 1510 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 1115 1255 - -
Lapu10g00364 1510 FunFam ABC transporter B family member 19 283 615 - -
Lapu10g00364 1510 FunFam Multidrug resistance protein 1, 2, 3 618 869 - -
Lapu10g00364 1510 SUPERFAMILY ABC transporter transmembrane region 283 605 IPR036640 GO:0005524|GO:0016020
Lapu10g00364 1510 ProSitePatterns ABC transporters family signature. 759 773 IPR017871 GO:0005524|GO:0016887
Lapu10g00364 1510 Gene3D ABC transporter type 1, transmembrane domain 1230 1507 IPR036640 GO:0005524|GO:0016020
Lapu10g00364 1510 SMART AAA_5 647 848 IPR003593 GO:0016887
Lapu10g00364 1510 SMART AAA_5 1291 1477 IPR003593 GO:0016887
Lapu10g00364 1510 CDD ABC_6TM_Pgp_ABCB1_D2_like 931 1246 - -
Lapu10g00364 1510 CDD ABC_MTABC3_MDL1_MDL2 620 857 - -
Lapu10g00364 1510 SUPERFAMILY ABC transporter transmembrane region 924 1247 IPR036640 GO:0005524|GO:0016020
Lapu10g00364 1510 Pfam ABC transporter 1283 1430 IPR003439 GO:0005524
Lapu10g00364 1510 CDD ABC_MTABC3_MDL1_MDL2 1264 1502 - -
Lapu10g00364 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1261 1501 IPR027417 -
Lapu10g00364 1510 MobiDBLite consensus disorder prediction 1 63 - -
Lapu10g00364 1510 Pfam ABC transporter transmembrane region 296 567 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu10g00364 1510 Pfam ABC transporter transmembrane region 943 1212 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu10g00364 1510 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 944 1228 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu10g00364 1510 Gene3D - 610 858 IPR027417 -
Lapu10g00364 1510 Gene3D - 1253 1504 IPR027417 -
Lapu10g00364 1510 MobiDBLite consensus disorder prediction 158 176 - -
Lapu10g00364 1510 MobiDBLite consensus disorder prediction 153 185 - -
Lapu10g00364 1510 Pfam ABC transporter 638 787 IPR003439 GO:0005524
Lapu10g00364 1510 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 297 585 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu10g00364 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 856 IPR027417 -
Lapu10g00364 1510 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 620 856 IPR003439 GO:0005524
Lapu10g00364 1510 PANTHER ABC TRANSPORTER B FAMILY 258 856 IPR039421 -
Lapu10g00364 1510 CDD ABC_6TM_Pgp_ABCB1_D1_like 297 593 - -
Lapu10g00364 1510 ProSitePatterns ABC transporters family signature. 1403 1417 IPR017871 GO:0005524|GO:0016887
Lapu10g00364 1510 MobiDBLite consensus disorder prediction 7 45 - -
Lapu10g00364 1510 FunFam ABC transporter B family member 1 1253 1504 - -
Lapu10g00364 1510 Gene3D ABC transporter type 1, transmembrane domain 283 1229 IPR036640 GO:0005524|GO:0016020
Lapu10g00364 1510 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1264 1500 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00364 Lapu-Chr10 5947157 5954650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00364 972 1507 Calmodulin-binding Proteins AT2G36910 37.918 2.57e-107 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00364 K05658 - gmx:100816700 2616.26