Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00353 ATGGCCGCCCCTACCAACGCCACCGCCGCCCCGCCGCGCCAGCTCTCCCAGAAGGAAGCCGACATCCAGATGATGTTGGCCGCCGATGTCCACCTCGGCACCAAGAACTGCGATTTCCAAATGGAACGCTACATCTTCAAGCGCCGCAACGACGGTATTTACATTATCAACCTTGGGAAGACGTGGGAGAAGCTTCAGCTTGCTGCCAGGGTTATTGTTGCAATTGAGAACCCTCAGGATATTATTGTGCAATCTGCCAGGCCTTATGGTCAGAGAGCTGTTCTCAAGTTTGCTCAGTACACCGGTGCTCACGCCATTGCTGGAAGGCACACTCCTGGTACCTTTACCAATCAGCTCCAAACCTCCTTCAGTGAGCCTCGCCTTCTTATCCTCACAGATCCAAGAACAGATCATCAGCCTATTAAGGAAGGTGCTCTTGGAAACATTCCAACCATTGCTTTCTGTGACACTGACTCGCCTATGAGATATGTTGACATTGGAATTCCTGCCAACAACAAGGGCAAACACAGCATTGGCTGTCTCTTTTGGCTTCTTGGCAGGATGGTCTTGCAGATGAGGGGTACCATTCGCCCTGGACTCAAATGGGATGTCATGGTGGACTTGTTCTTCTACAGAGAACCAGAGGAGGCTAAGCAACAAGAAGAGGAGGAAGCTCCTGCTGGTGATTATGCCATCACTGACTATAATCCTGGTGCTATTGCTGCTGATGGCCAGTGGCCAGGTACAATCGATCAATCATGGTCAGATGCAGTTCCACAACCTATTCCTGCTGCACCTGGTGTCAACTGGGCAGCACCACCCGCTGCAGAAGCAGCTGGAATAGCTGCAGTTGCAGGAGAATGGGGTGAGGCTGTTCCACCGCCACAACAAATCCCTCTTCCTCCTTCTGGAGTTGAATCTGTCCAACCAACTGGCTGGGACTAA 945 0.5185 MAAPTNATAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLGRMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAGDYAITDYNPGAIAADGQWPGTIDQSWSDAVPQPIPAAPGVNWAAPPAAEAAGIAAVAGEWGEAVPPPQQIPLPPSGVESVQPTGWD* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00353 314 Gene3D - 21 227 - -
Lapu10g00353 314 FunFam 40S ribosomal protein SA 21 227 - -
Lapu10g00353 314 Pfam Ribosomal protein S2 25 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lapu10g00353 314 Pfam Ribosomal protein S2 124 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lapu10g00353 314 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Lapu10g00353 314 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lapu10g00353 314 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lapu10g00353 314 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lapu10g00353 314 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lapu10g00353 314 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lapu10g00353 314 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lapu10g00353 314 MobiDBLite consensus disorder prediction 287 314 - -
Lapu10g00353 314 NCBIfam 30S ribosomal protein S2 17 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lapu10g00353 314 Hamap 40S ribosomal protein SA [rps-0]. 9 257 IPR027498 GO:0003735|GO:0006412|GO:0015935
Lapu10g00353 314 PANTHER 40S RIBOSOMAL PROTEIN SA 12 298 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lapu10g00353 314 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lapu10g00353 314 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00353 Lapu-Chr10 5866408 5868314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00353 6 287 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 75.088 1.09e-153 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00353 K02998 - gmx:100805318 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00353 10 5866408 5868314 Lapu10g00353 10 5866408 5868314 ECH