Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00348 ATGTGTGGAGGTGCGATTATCTCCGACTTCATTCCGGCGGGGCCGGCTGGCCGGTCCCGACGCGTGACCCCCGACATCCTGTGGCCGAATTTGGGGAAGCAGTTCTCGAAGCCGCTGCTGGACGATGATTTCGAGGCTGGGTTCAGAGAATTCAAGGATGACTCTGAAATCGAGGATGATGATGATGAGGATGAAGATGATGACTTGATGGTGGTTGGTGTGAAGAAGCCCTTTGGCTTTTCTCGCCCCAGCAAGACTTCTAAGTCTCTTTCTCGTGGATCAACAACAGTGAAATCTGTGGAATCAAAGGGGCAAGCTGAGAAGTGTGCCAAGAGAAAGAGGAAGAACCAATATAGAGGAATTCGCCAGCGTCCATGGGGAAAGTGGGCTGCTGAGATCCGTGACCCGAGAAAAGGGGTTCGCGTTTGGCTTGGAACTTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAGGCAAGGAGGATTCGTGGGAAGAAAGCCAAGGTGAATTTCCCTGATGAGCCTTCAGCTGCTTCTTCAAAACGCCTCAAGGTGAATCCAGAGGCTCGGCCATTGAAGGGAAACCTCAACTCTGTGAAGCCGAAAATGAACCAGATGTTCAATTTTGGTGACAATCTGGAGGACTACTACAGCCCTATAGATCAAGTGGAACAGAAACCTTTGGTTAATCAGTTTGTGAACCCTGGTTCATTCACTGGAAATGGTGTTCAACTCTCACCTGTTACTCCATCTGCTGATGTCACTGCTTATTTCAGTTCTGAGTATTCGAGCAATTCATTTGATTATTCTGACCTTGGATTGGGTGAACAAGTCCCAAAGACTCCTGAAATCTCATCCATGCTTTCTGCTCCTGTGGAGGGTGAATCTCAGTTTGTGCAGGGTGCTGATCAGATTCAGAAGAAAGACACTCAGGACATGATGCCTGTTGTGGAAGATAACTCTGCAAAGACACTTTCTGAGGAGCTTGCAGACATCGAATCCCAGCTGAAGTTCTTTGAGGCCCCTTTGTTTGATGGAAGCTGGGGTGAGGCCTCATTGGCGTCTCTGCTTGGCGGCGATGCAACTCAGGATGCTGGAAACCCTTTGAATCTTTGGACCTTCGATGACCTGCCATCAATGGCAGGCGTTTTCTGA 1161 0.4918 MCGGAIISDFIPAGPAGRSRRVTPDILWPNLGKQFSKPLLDDDFEAGFREFKDDSEIEDDDDEDEDDDLMVVGVKKPFGFSRPSKTSKSLSRGSTTVKSVESKGQAEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPDEPSAASSKRLKVNPEARPLKGNLNSVKPKMNQMFNFGDNLEDYYSPIDQVEQKPLVNQFVNPGSFTGNGVQLSPVTPSADVTAYFSSEYSSNSFDYSDLGLGEQVPKTPEISSMLSAPVEGESQFVQGADQIQKKDTQDMMPVVEDNSAKTLSEELADIESQLKFFEAPLFDGSWGEASLASLLGGDATQDAGNPLNLWTFDDLPSMAGVF* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00348 386 SMART rav1_2 117 180 IPR001471 GO:0003700|GO:0006355
Lapu10g00348 386 FunFam Ethylene-responsive transcription factor 2 116 175 - -
Lapu10g00348 386 Gene3D AP2/ERF domain 116 175 IPR036955 GO:0003700|GO:0006355
Lapu10g00348 386 MobiDBLite consensus disorder prediction 79 120 - -
Lapu10g00348 386 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Lapu10g00348 386 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Lapu10g00348 386 ProSiteProfiles AP2/ERF domain profile. 117 174 IPR001471 GO:0003700|GO:0006355
Lapu10g00348 386 PANTHER DNA-BINDING DOMAIN 91 329 IPR044808 GO:0003700|GO:0009873
Lapu10g00348 386 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
Lapu10g00348 386 SUPERFAMILY DNA-binding domain 117 175 IPR016177 GO:0003677
Lapu10g00348 386 CDD AP2 117 175 IPR001471 GO:0003700|GO:0006355
Lapu10g00348 386 MobiDBLite consensus disorder prediction 82 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00348 Lapu-Chr10 5811567 5816392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00348 1 382 AP2-EREBP Transcription Factor Family AT3G14230 43.932 1.62e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lapu10g00348 AP2 4.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00348 K09286 - gmx:100818646 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00348 10 5811567 5816392 Lapu10g00348 10 5811567 5816392 ECH