Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00347 ATGTCACGTACAAGAGTTAAAAAACAAGTTAGCCAAGCGGATGCAGATGAGGAGGATCTCCCTTTGAGAATCCTCAAGGGGAAGGAGACAAAGACTGGTGAATCTTCCCGTTCCCGTGCTTACTGTCGTATTTGCATGGATGCGAAGGCTGGTGGAAAAATGTTCTGGAACCAAAACTGTTCTCACATTTTTTGTAACAGCTGCATTGGAAGACATGTTGGTGCAAAGATTGAGGAGAATATACCAGTGGTTAAATGCCCTTACCCGTGTAGCAAAGCGGTTATAGAACCTCAGCACTGTCTTTCAGTTATCCCTAAAGAAGTGTCTGATAGATGGGGAAATGCCCTTTGCCAGACTGTAGTGCTTGAAGCAGAAAAGTTTTACTGTCCTTTTAAGGATTGTTCAGCTATGATGATATATGACGCCAAGGAAGTTTTTACAGCATCGGAGTGTCCACATTGCAATAGACTATTTTGTGCACTGTGCAAGGTTTCGTGGCATGCAGGGAAGACTTGTGAGGAGTTTCAGAGGTTGGAGGGGTCCGACCGAGAGAGGGAAGAGACAATGGTGAAGGAACTTGCAAAGGCTAAACATTGGAAAAGATGTCCAAAATGCAGTTTTTATGTTGAAAGGACTGAAGGATGTTCGCGTATTTCTTGCAGGATTGATTAG 672 0.4375 MSRTRVKKQVSQADADEEDLPLRILKGKETKTGESSRSRAYCRICMDAKAGGKMFWNQNCSHIFCNSCIGRHVGAKIEENIPVVKCPYPCSKAVIEPQHCLSVIPKEVSDRWGNALCQTVVLEAEKFYCPFKDCSAMMIYDAKEVFTASECPHCNRLFCALCKVSWHAGKTCEEFQRLEGSDREREETMVKELAKAKHWKRCPKCSFYVERTEGCSRISCRID* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00347 223 ProSiteProfiles Zinc finger RING-type profile. 42 87 IPR001841 -
Lapu10g00347 223 FunFam RBR-type E3 ubiquitin transferase 37 123 - -
Lapu10g00347 223 Pfam IBR domain, a half RING-finger domain 121 172 IPR002867 GO:0008270
Lapu10g00347 223 ProSitePatterns Zinc finger RING-type signature. 60 69 IPR017907 -
Lapu10g00347 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 122 IPR013083 -
Lapu10g00347 223 Gene3D - 169 222 - -
Lapu10g00347 223 CDD BRcat_RBR_unk 123 175 - -
Lapu10g00347 223 ProSiteProfiles TRIAD supradomain profile. 38 223 IPR044066 -
Lapu10g00347 223 SMART ibrneu5 110 172 IPR002867 GO:0008270
Lapu10g00347 223 SUPERFAMILY RING/U-box 117 177 - -
Lapu10g00347 223 SUPERFAMILY RING/U-box 38 119 - -
Lapu10g00347 223 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 32 220 IPR031127 GO:0004842|GO:0016567
Lapu10g00347 223 SUPERFAMILY RING/U-box 185 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00347 Lapu-Chr10 5791737 5792506 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00347 27 221 C3H Transcription Factor Family AT2G19610 23.529 8.16e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00347 K11975 - gmx:100815626 320.087