Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu10g00347 | ATGTCACGTACAAGAGTTAAAAAACAAGTTAGCCAAGCGGATGCAGATGAGGAGGATCTCCCTTTGAGAATCCTCAAGGGGAAGGAGACAAAGACTGGTGAATCTTCCCGTTCCCGTGCTTACTGTCGTATTTGCATGGATGCGAAGGCTGGTGGAAAAATGTTCTGGAACCAAAACTGTTCTCACATTTTTTGTAACAGCTGCATTGGAAGACATGTTGGTGCAAAGATTGAGGAGAATATACCAGTGGTTAAATGCCCTTACCCGTGTAGCAAAGCGGTTATAGAACCTCAGCACTGTCTTTCAGTTATCCCTAAAGAAGTGTCTGATAGATGGGGAAATGCCCTTTGCCAGACTGTAGTGCTTGAAGCAGAAAAGTTTTACTGTCCTTTTAAGGATTGTTCAGCTATGATGATATATGACGCCAAGGAAGTTTTTACAGCATCGGAGTGTCCACATTGCAATAGACTATTTTGTGCACTGTGCAAGGTTTCGTGGCATGCAGGGAAGACTTGTGAGGAGTTTCAGAGGTTGGAGGGGTCCGACCGAGAGAGGGAAGAGACAATGGTGAAGGAACTTGCAAAGGCTAAACATTGGAAAAGATGTCCAAAATGCAGTTTTTATGTTGAAAGGACTGAAGGATGTTCGCGTATTTCTTGCAGGATTGATTAG | 672 | 0.4375 | MSRTRVKKQVSQADADEEDLPLRILKGKETKTGESSRSRAYCRICMDAKAGGKMFWNQNCSHIFCNSCIGRHVGAKIEENIPVVKCPYPCSKAVIEPQHCLSVIPKEVSDRWGNALCQTVVLEAEKFYCPFKDCSAMMIYDAKEVFTASECPHCNRLFCALCKVSWHAGKTCEEFQRLEGSDREREETMVKELAKAKHWKRCPKCSFYVERTEGCSRISCRID* | 224 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu10g00347 | 223 | ProSiteProfiles | Zinc finger RING-type profile. | 42 | 87 | IPR001841 | - | |
Lapu10g00347 | 223 | FunFam | RBR-type E3 ubiquitin transferase | 37 | 123 | - | - | |
Lapu10g00347 | 223 | Pfam | IBR domain, a half RING-finger domain | 121 | 172 | IPR002867 | GO:0008270 | |
Lapu10g00347 | 223 | ProSitePatterns | Zinc finger RING-type signature. | 60 | 69 | IPR017907 | - | |
Lapu10g00347 | 223 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 36 | 122 | IPR013083 | - | |
Lapu10g00347 | 223 | Gene3D | - | 169 | 222 | - | - | |
Lapu10g00347 | 223 | CDD | BRcat_RBR_unk | 123 | 175 | - | - | |
Lapu10g00347 | 223 | ProSiteProfiles | TRIAD supradomain profile. | 38 | 223 | IPR044066 | - | |
Lapu10g00347 | 223 | SMART | ibrneu5 | 110 | 172 | IPR002867 | GO:0008270 | |
Lapu10g00347 | 223 | SUPERFAMILY | RING/U-box | 117 | 177 | - | - | |
Lapu10g00347 | 223 | SUPERFAMILY | RING/U-box | 38 | 119 | - | - | |
Lapu10g00347 | 223 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 32 | 220 | IPR031127 | GO:0004842|GO:0016567 | |
Lapu10g00347 | 223 | SUPERFAMILY | RING/U-box | 185 | 220 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu10g00347 | Lapu-Chr10 | 5791737 | 5792506 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu10g00347 | 27 | 221 | C3H Transcription Factor Family | AT2G19610 | 23.529 | 8.16e-15 | 70.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu10g00347 | K11975 | - | gmx:100815626 | 320.087 |