Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00345 ATGAATTTCCCCTCTACTGCTGAAGATCATTATTTGGTTGACGATTTCTACTTTTCAGCACTTCACGATGCTGAAGAAATATTTCCAATTTCGGATGAGAAATATGCTGAAGAGCTACAACTACAGGAAGCCCTCTATTCCTCTACAATGTCAGGTGCTGGGGTTGAAAACGAAGTTGTTCAACTGGATGCAGATGATGACGGTGACCTCCCTTTGAGAATCCTCAAGGGGAAACAGAAAGAGACCGGAGAATCTTCCCATGCCTACTGTGGTATTTGCATGGATGCCAAACCTGGAGAAGAAATGTTCAGGAACCAAAACTGTTCTCACCTATTTTGTGATGATTGCATTGGAAGATATCTAGCTACAAAGATTCAGGAAAATATATCAATGGTGAAATGTCCTGAACCAAAATGCAAAGGGGTTCTGGAGTCTCAGTATTGTCATTCAATTATTCCTAAGGAAGTGTTGGATCGATGGGAAAACGCCCTTTGTGAGAATGTAGTGCTTGAATCACAAAAGTTCTACTGTCCTTTTAAGGATTGCTCAGCTATGATGATAAGTGATGCAGGGGAAGTTGTAACTATTTCTGAATGTCCATATTGTAACAGGTTGTTTTGTGCGCAGTGCAAGGTTTCATGGCACGCAGAATTAGATTGCAGTGAGTTTCAGGCCTTGAAACAGGATGAGAGAGGGAGGGAAGATCTGCATTTACTGACTCTTGCCAAGAACAAAAGCTGGAGAAGATGTCCACAATGCAAATTTTATGTGGAAAAAACTGAAGGATGTTCACATATTTCTTGCAGGAATTTTCCCTCTACTGCTGAGGCTGAGGACCAACACTTGGTTGACGATTTCTACTTTTCAGCACTTCATGATGCTGATGAAATATTTCCAATTTCGGATGAGAAATATGCTGAAGAGCTACAACTACAGGAAGCCCTCTATTCCTCTTCAAGGTCAAGTACTAGAGTTGAAAACCAAGTTATCCAAGTGGATGTAGATGATGAGGGTGATGTCCCTTCGAAAATCCTCAAGGGGAAACGGATAAAAACCAGTGAATCTTCCCATGTCTTCTGTGGTATATGCATGGATGCCAAACCTGGTGAAGAAATGTTCAGGAACCAAAACTGTTATCACATTTTCTGTGATGATTGCATTGGAAGACATGTTGCTGCAAAGATTCAGGAGAACATATCAATGGTGAAATGTCCTGAACCAAAATGCAAAGGGGTTATAGAGCCTCAGTATTGTCGTTCAATCATCCCTAAAGAAGTGTTGGATAGATGGGAAAATGCTCTTTGTGAGAATGTGGTGCTTGGATCAGAGAAGTTTTACTGTCCTTTTAATGATTGCTCAGCTATGATGATATGTGATGACAAGGAAGTTGTGACTTCATCGGAGTGTCCACATTGCCATAGACTGTTTTGTGCGCAGTGCAAGGTTCCATGGCACGCGGAAATAGATTGTAAGGAGTTTCAGGATGGTTCCGAACAAGAGAGGGAAGATCGAATGGTTATGAAACTTGCAAAGAATAATCGTTGGCAAAGATGTCCAAAATGCAAGTTTTTTGTAGAAAGAATTGATGGATGTACACGTATTTCTTGCAGATGCGGCAATGAATTTTGCTATGCTTGTGGATTGGCTTGGGCTAGTAATCATTATTCATGTGTAGGTGTCGTTTAA 1686 0.4093 MNFPSTAEDHYLVDDFYFSALHDAEEIFPISDEKYAEELQLQEALYSSTMSGAGVENEVVQLDADDDGDLPLRILKGKQKETGESSHAYCGICMDAKPGEEMFRNQNCSHLFCDDCIGRYLATKIQENISMVKCPEPKCKGVLESQYCHSIIPKEVLDRWENALCENVVLESQKFYCPFKDCSAMMISDAGEVVTISECPYCNRLFCAQCKVSWHAELDCSEFQALKQDERGREDLHLLTLAKNKSWRRCPQCKFYVEKTEGCSHISCRNFPSTAEAEDQHLVDDFYFSALHDADEIFPISDEKYAEELQLQEALYSSSRSSTRVENQVIQVDVDDEGDVPSKILKGKRIKTSESSHVFCGICMDAKPGEEMFRNQNCYHIFCDDCIGRHVAAKIQENISMVKCPEPKCKGVIEPQYCRSIIPKEVLDRWENALCENVVLGSEKFYCPFNDCSAMMICDDKEVVTSSECPHCHRLFCAQCKVPWHAEIDCKEFQDGSEQEREDRMVMKLAKNNRWQRCPKCKFFVERIDGCTRISCRCGNEFCYACGLAWASNHYSCVGVV* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00345 561 ProSiteProfiles TRIAD supradomain profile. 356 561 IPR044066 -
Lapu10g00345 561 ProSiteProfiles TRIAD supradomain profile. 86 304 IPR044066 -
Lapu10g00345 561 ProSiteProfiles Zinc finger RING-type profile. 360 408 IPR001841 -
Lapu10g00345 561 CDD Rcat_RBR_unk 514 550 - -
Lapu10g00345 561 Gene3D - 488 560 - -
Lapu10g00345 561 SUPERFAMILY RING/U-box 355 437 - -
Lapu10g00345 561 CDD BRcat_RBR_unk 441 493 - -
Lapu10g00345 561 SUPERFAMILY RING/U-box 501 556 - -
Lapu10g00345 561 ProSiteProfiles Zinc finger RING-type profile. 90 138 IPR001841 -
Lapu10g00345 561 CDD BRcat_RBR_unk 171 223 - -
Lapu10g00345 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 172 IPR013083 -
Lapu10g00345 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 353 442 IPR013083 -
Lapu10g00345 561 ProSitePatterns Zinc finger RING-type signature. 108 117 IPR017907 -
Lapu10g00345 561 FunFam RBR-type E3 ubiquitin transferase 85 171 - -
Lapu10g00345 561 ProSitePatterns Zinc finger RING-type signature. 378 387 IPR017907 -
Lapu10g00345 561 SMART ibrneu5 158 220 IPR002867 GO:0008270
Lapu10g00345 561 SMART ibrneu5 499 557 IPR002867 GO:0008270
Lapu10g00345 561 SMART ibrneu5 428 490 IPR002867 GO:0008270
Lapu10g00345 561 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 331 550 IPR031127 GO:0004842|GO:0016567
Lapu10g00345 561 Pfam IBR domain, a half RING-finger domain 159 220 IPR002867 GO:0008270
Lapu10g00345 561 Pfam IBR domain, a half RING-finger domain 430 490 IPR002867 GO:0008270
Lapu10g00345 561 Pfam IBR domain, a half RING-finger domain 509 557 IPR002867 GO:0008270
Lapu10g00345 561 SUPERFAMILY RING/U-box 85 167 - -
Lapu10g00345 561 SUPERFAMILY RING/U-box 167 224 - -
Lapu10g00345 561 SUPERFAMILY RING/U-box 437 495 - -
Lapu10g00345 561 FunFam RBR-type E3 ubiquitin transferase 355 441 - -
Lapu10g00345 561 SUPERFAMILY RING/U-box 231 268 - -
Lapu10g00345 561 SMART ring_2 177 253 IPR001841 -
Lapu10g00345 561 SMART ring_2 90 139 IPR001841 -
Lapu10g00345 561 SMART ring_2 360 409 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00345 Lapu-Chr10 5768104 5772907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00345 360 547 C3H Transcription Factor Family AT2G19610 25.871 1.23e-20 92.8