Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00343 ATGTTTCCATTCCATCCTCATGGAGCTCCGAAACACGCCTGCAGTCTTCTTGCCGTAACCTGTGGCGCAAGTTTCGAGGAGCACAAGTCCTCAGAGAATGAGCGCAAATATCCTTATCCAGAGCTAGTTTCCGCCGGGCGTCTTGAGGTTCAAACTCTTCTTAATCCGGATAAGGAACAGTTTAGGAAAGTGCTGGAGTCCTATCAACCGAATTTTGTTTACTTGCAAGGAGAACAGCTAGAGGATGGCAAAGTTGGTTCACTGGTTTGGCAAGGTGTGGAATTATCGACTTCTGAAGATATGATAGAGCTCTTTGGTTCCACATTGCCGACGGCTGTTTATTTAGAAATACCAAATGGAGAATGTTTTGCAGAGGCTCTTCATCTTAAGGGAATCCCATATGTTATATTTTGGAAGAATGCCTTCTCTTCTTATGCTGCCTGCCATTTTCGTCAAGCATTTCTTTCAGTTGTACAGAGTTCATCTACGCATACATGGGATGCTTTCCACCTTGCACGTGCCTCTTTTGAACTTTACTGTGTCCGAAACAATCAAGTACTTTCTACTGACAGCCATGATCCTATTAGTGAGATGGGGCCACACCTTCTTGGCGACTGTCTCAAAATCAATATTGACCCTCCAGAGATTGATGAGGAAGATGATGACGAAAGTTCCTCAGGCACTCTGCCAGCCATAAAGATACATGAAGATGAAGTGAACTTGAGATTTCTCATCTGTGGTGCACCTTCGACTGTTAATGAGTCATTGCTGAGATCTTTGGAGGATGGACTCAGAGCTCTCTTAACCATTGAAATCCGTGGTTGCAAGCTCCATGGCAAGTTTAGTGCCCCACCACCACCTCTTCAGGCAGCCACTTTTTCTCGTGGAGTTGTGACCATGCGATGTGATATATCAACCTGTAGTTCTGCACATATCTCACTTCTGGTATCTGGCAGTGCACAAACTTGTTTTAATGATCAGCTCTTGGAGAGTCATATAAAAAATGAGATAATTGAGAAGAGTCAACTAGTTCATGCACAACTCAACGAGGGAAGCAAACAGAACGTCTCTGAACCTCGGAGATCTGCTTCTATTGCCTGTGGAGCACCTGTATTTGAAATTTGCATGAAGCTTCCTCAATGGGCTTTGCAGATTTTGAGGCAGCTAGCACCTGAGGTTTCTTATCGAAGTTTAGTTGCGCTTGGTATTGCTAGTATTCAGGGGTTGCCTATAGCTTCTTTTGAGAAAGATGATGCTGAGCGCTTACTTTTCTTCTATCAAAGTTGTGAGAAAGATAGAGGTACAAACAAAAATAATATAATATTTAGCAGCCCCCCTGGTTGGTTGAAACCACCTCCTCCTAGAAGAAAAAGGTGTGAACCAAGCCAAGGGGCTAGCCCTGGTCTTCATGAAGGTGTCTTTGCAGGGCAGGGCACTGTTTGTAAAGCAAATGAAGAGGAAAAGGATAGAAAAATGGCTAATGGGATTAGCACCCCGTTAACTCCTGCTAGACAGAGATTAAAAGTATCTGCAATGAGGCCAATTCCTCACATTCGCCGCCATAGAATGACACCATTTTGTGGGTCTTCTGAGACAGATGGTTTTGATGGTGCCCACGTAGAGGCTAATTTGCCACTTGTTGCCCCAACAAAGCGTAGTATTGGATCAACATCTGCAACACACAGAAAATCATTTTCAAGCGCAGCTCAGTCTAAGCAGGTTATTTCCTTGAACCCATTGCCTCTTAAGAAACATGGCTGCGGTAGAGGCCCAGTACAGACGTGCTCTGAGGAGGAATTTCTTAAAGACGTCATGGAGTTTCTGATTCTCCGGGGGCATAATCGATTAATTCCTCAAGGAGGGCTTACCGAGTTCCCCGATGCCATACTCAATGGAAAACGTCTTGATCTCTACAATTTGTATAAAGAGGTGGTTACCAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGGCAAATATTTTCAAAGATGCGCAATTACACCACTACCAATAGAATGACTGGTGTTGGAAATACTCTGAAAAGACATTATGAGACCTACCTTTTAGAATATGAATTAGCTCATGATGATGTGGATGGAGAATGTTGCTTGTTGTGTCACAGTAGTGCAGCTGGTGATTGGGTGAATTGTGGCATATGTGGTGAGTGGGCTCACTTTGGCTGTGACAGAAGGCAGGGTCTTGGCGCATTTAAGGATTATGCAAAAACAGATGGGCTAGAATACATATGTCCTCATTGTAGTGTTACAAATTTCAAGAAAAAACAAAATGTTGCTAACGGGTATTCTCAAGGGTCAATGTCTTCACGACTCCTTTGA 2343 0.4379 MFPFHPHGAPKHACSLLAVTCGASFEEHKSSENERKYPYPELVSAGRLEVQTLLNPDKEQFRKVLESYQPNFVYLQGEQLEDGKVGSLVWQGVELSTSEDMIELFGSTLPTAVYLEIPNGECFAEALHLKGIPYVIFWKNAFSSYAACHFRQAFLSVVQSSSTHTWDAFHLARASFELYCVRNNQVLSTDSHDPISEMGPHLLGDCLKINIDPPEIDEEDDDESSSGTLPAIKIHEDEVNLRFLICGAPSTVNESLLRSLEDGLRALLTIEIRGCKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLESHIKNEIIEKSQLVHAQLNEGSKQNVSEPRRSASIACGAPVFEICMKLPQWALQILRQLAPEVSYRSLVALGIASIQGLPIASFEKDDAERLLFFYQSCEKDRGTNKNNIIFSSPPGWLKPPPPRRKRCEPSQGASPGLHEGVFAGQGTVCKANEEEKDRKMANGISTPLTPARQRLKVSAMRPIPHIRRHRMTPFCGSSETDGFDGAHVEANLPLVAPTKRSIGSTSATHRKSFSSAAQSKQVISLNPLPLKKHGCGRGPVQTCSEEEFLKDVMEFLILRGHNRLIPQGGLTEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQNVANGYSQGSMSSRLL* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00343 780 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 777 IPR042293 -
Lapu10g00343 780 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 761 IPR013083 -
Lapu10g00343 780 SMART ARID_2 591 694 - -
Lapu10g00343 780 ProSiteProfiles ARID domain profile. 594 698 IPR001606 GO:0003677
Lapu10g00343 780 CDD PHD_ARID4_like 704 755 - -
Lapu10g00343 780 Pfam ARID/BRIGHT DNA binding domain 597 694 IPR001606 GO:0003677
Lapu10g00343 780 SUPERFAMILY ARID-like 594 709 IPR036431 GO:0003677
Lapu10g00343 780 Gene3D - 592 697 IPR036431 GO:0003677
Lapu10g00343 780 SUPERFAMILY FYVE/PHD zinc finger 690 758 IPR011011 -
Lapu10g00343 780 MobiDBLite consensus disorder prediction 436 471 - -
Lapu10g00343 780 CDD ARID 596 694 - -
Lapu10g00343 780 SMART bright_3 595 699 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00343 Lapu-Chr10 5748990 5756874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00343 4 769 ARID Transcription Factor Family AT3G43240 59.948 0.0 931
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lapu10g00343 ARID 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00343 - - gmx:100816540 1422.53