Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00335 ATGACTAACCCAAAAGTTCCCTACGCCGGAATCTCCGATTCCGGCAACCACATTTCCCTCTCTAAACAAACCCACAAGAAGAAAAAGAAGATCTTCCTCACCCTCTTCGCCACCCTTCTGGTGGCGGCCTCCGTCGTGGCCATCGTTGCCGGAGTAAAACACAAAAACCAAAAGTCCGACACCAGCAGCAGCACCCCCCTCTCCCTCTCCCTCTCCCACGAGTCCCACGCGATCATCAAGCGCGCGTGCAGTTCCACATTCTACTCAGAACTCTGCTTCTCCGCGGTGGCTTCAGAACCCAACGTCACCCACAAAGTAACCTCTCACCGTGACGTCATCCAACTCTCCCTCAACATCACCACGCGCGCGGTGGAGCACAACTACTTCACCGTGAAGAAGCTCATCGCCAAACGCGGCCTTACGAAGCGCGAGAAAACCGCGCTCCACGATTGTCTCGAAACCATCGACGAGACTCTGGACGAGCTAAGAGAGGCCGAGCACGACCTCGAGCTCTACCCCAACAACAAAACGCTCTACCAGCACGCCGACGACCTCAAAACCCTTATCAGCGCCGCCATAACCAACCAGGTCACGTGCCTCGACGGCTTCTCGCACGAGGAGGCCGATAAGCGCGTGAGGAAGGCCCTGGAAGAAGGACAGGTCCACGTGGAACACATGTGCAGCAACGCACTGGCCATGACCAAGAACATGACTGACACCGACATCGCCAACTTCGAACAGTCCATGAAGCTCCGAGACAACAACGTTGGCAAAAATAGAAAGCTCTTGGCGGAGGAGAGCAATGCCAATGGTGACGATGGTGTTGTCTGGCCGGAGTGGATTTCTGCTACCGACAGGAGGCTGCTTCAGGCGGCGGCGGTGAAGGCTGATGTGGTGGTGGCTGCGGACGGTAGTGGAGACTTTAAGACGGTGTCGGAGGCGGTGGAAGCTGCTCCATTGAAGAGTAGTAAGAGGTTTGTTATTAGGATAAAGGCTGGAGTTTACAGAGAGAATGTGGAAGTTCCTAAGAAGAAGACTAATATCATGTTCTTGGGTGATGGAAGAACCACCACCATCATCACCGGTAGTAGAAATGTCGTTGATGGTAGCACCACCTTCCACTCTGCCACCGTCGCTGTTGTAGGTGAAAATTTCCTGGCCCGGGACATAACTTTCCAAAACACAGCGGGGCCCTCAAAGCACCAAGCTGTGGCCCTAAGAGTAGGAGGGGACCTCTCAGCATTCTACAACTGTGACATCTTGGCATTCCAAGACACCCTTTATGTTCACAACAACCGTCAATTCTTTGTCAAGTGCCTCATTGCAGGGACAGTGGATTTCATCTTTGGTAACTCCGCAGTGGTGTTCCAAGACTGTGACATCCACGCTAGGCGTCCTGACTCGGGCCAGAAGAACATGGTGACGGCCCAAGGAAGAGTAGACCCTAACCAAAACACTGGCATTGTGATCCAAAAGTGCAGGATTGGTGCCACTTCAGACTTGGAGTCTGTGAAGAAGAGTTTCAAGACCTATCTTGGGAGACCCTGGAAGGAGTACTCTAGAACTGTGATCATGCAGAGTAGTATCACTGATGTGATTGACCCTGTTGGGTGGCATGAGTGGAGTGGCAACTTTGCACTGAACACTTTGGTCTATAGGGAGTATCAGAACACTGGGCCTGGTGCTGGAACCTCCAATAGGGTCTCTTGGAAAGGGTTTAAGGTCATAACTGATGCTGCTGAGGCCCGGGCTTTTACCCCTGGATCTTTCATTGGGGGCTCCAGCTGGTTGGGCTCTACTGGCTTTCCCTTCTCTCTGGGCTTTATGGATACAATCAAGTCATTCAAGGGCTACGGCAAAGTGGACGAGTTAGAGCAGCAAGCCTATCAGAAGAAGACACGTAAGCGCCTCATAATCATCACGCTCTCTTCCATCGTTCTGATTGCGGTCATCATCGCTGCGGTTGCAGGGGTCGTCATACACAACCGCAACAACGAATCGTCACCCTCATCTGACTCCGCGCCGCAAACGGAGTTATCTCCGGCTGCGTCACTCAAAGCCGTGTGCCAAGCCACTCGCTACCCTAACTCCTGCTTCTCCTCCATATCCTCCTTACCGGAATCCAACACCACCGACCCGGAGCTTCTCTTCAAGCTATCTCTCCGCGTCGCCATTGATGAGCTCTCTAAGCTCTCCAGCTTCCCTTCCAAGCTTCGCGCCAATGCGGAGCACGACGCGCGTCTCCAGAAGGCGATCGACGTCTGCAGTTCCGTCATCGGCGACGCGCTGGACCGCCTCAACGACTCGATCTCCGCGCTCGGAACCGTCACCGGAAAGATTGCTTCTCCGGCGAGAGTCAGCGACGTGAAGACGTGGCTCAGCGCGGTGCTCACGGACCAGGATACGTGCCTCGACGCGCTCGGCGAGCTGAACTCCAATGCCGCTCGCGGCGTGCTCCAGGAGATCGAGACCGCTATGAGGAACTCCACGGAGTTCGCGAGCAACAGCTTGGCTATTGTAACGAAGATCCTGGGGTTGCTGTCGCGGTTCGAGACGCCGGTTCCCCATCGGCGGCTGCTAGGGTTTCCGGAGTGGCTTGGCGCGGCGGAGCGAAGGATGCTGGAAGAGAAGAGCAACAACTCGACGCCGGATGTTGTGGTGGCGAAGGACGGTACCGGACAGTTCAAGACGATCGGCGAGGCACTGAAGTTGGTGGAGAAGAAGAGCGAGAAGAGATTCTCGGTGTATGTGAAGGAAGGGAGCTACGTGGAGAACATCGATTTGGATAAGAACACGTGGAATGTGATGATCTACGGTGATGGCAAGGACAAAACCGTCGTCGTCGGTAGCCGGAACTTCATTGACGGCACGCCGACTTTCGAAACTGCAACTTTCGCTGTTAAAGGCAAGGGATTCATTGCCAAAGACATAGGGTTTGTGAACAATGCTGGTGCGTCAAAGCACCAGGCTGTGGCATTGAGATCTGGCTCGGATCGCTCTGTGTTCTACAGATGCTCATTTGATGGATTCCAAGATACCCTCTATGCTCATTCCAATCGCCAATTCTACCGTGACTGTGACATTACAGGCACCATAGACTTCATATTTGGCAATGCAGCTGTAGTGTTCCAAAGTTGCAAAATAATGCCTAGACAGCCCCTACCAAACCAGTTCAACACCATCACAGCTCAGGGCAAGAAAGACCCTAACCAGAACACTGGAATTATAGTTCAGAAATCAACGATCACTCCCCTGGGCAACAATCTCACAGCTCCCACATACCTTGGCAGGCCATGGAAAGATTTCTCCACCACTGTCATCATGCAATCTGATATTGGGTCATTCCTGAAACCGGTGGGATGGATGAGTTGGGTCCCCAATGTAGAACCTGCAAGTACCATTTTTTATGCAGAATATCTGAACAGTGGGCCAGGATCTGACGTGTCCCAGAGGGTCAAATGGGCCGGTTATAAGCCCACTCTCACGGACAGTGATGCAGGGAAGTTCAGTGTACAGTCTTTTATCCAAGGCCCTGATTGGTTGCCAAATGCAGATGTGCAGTTTGATTCCACCTTATGA 3579 0.532 MTNPKVPYAGISDSGNHISLSKQTHKKKKKIFLTLFATLLVAASVVAIVAGVKHKNQKSDTSSSTPLSLSLSHESHAIIKRACSSTFYSELCFSAVASEPNVTHKVTSHRDVIQLSLNITTRAVEHNYFTVKKLIAKRGLTKREKTALHDCLETIDETLDELREAEHDLELYPNNKTLYQHADDLKTLISAAITNQVTCLDGFSHEEADKRVRKALEEGQVHVEHMCSNALAMTKNMTDTDIANFEQSMKLRDNNVGKNRKLLAEESNANGDDGVVWPEWISATDRRLLQAAAVKADVVVAADGSGDFKTVSEAVEAAPLKSSKRFVIRIKAGVYRENVEVPKKKTNIMFLGDGRTTTIITGSRNVVDGSTTFHSATVAVVGENFLARDITFQNTAGPSKHQAVALRVGGDLSAFYNCDILAFQDTLYVHNNRQFFVKCLIAGTVDFIFGNSAVVFQDCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATSDLESVKKSFKTYLGRPWKEYSRTVIMQSSITDVIDPVGWHEWSGNFALNTLVYREYQNTGPGAGTSNRVSWKGFKVITDAAEARAFTPGSFIGGSSWLGSTGFPFSLGFMDTIKSFKGYGKVDELEQQAYQKKTRKRLIIITLSSIVLIAVIIAAVAGVVIHNRNNESSPSSDSAPQTELSPAASLKAVCQATRYPNSCFSSISSLPESNTTDPELLFKLSLRVAIDELSKLSSFPSKLRANAEHDARLQKAIDVCSSVIGDALDRLNDSISALGTVTGKIASPARVSDVKTWLSAVLTDQDTCLDALGELNSNAARGVLQEIETAMRNSTEFASNSLAIVTKILGLLSRFETPVPHRRLLGFPEWLGAAERRMLEEKSNNSTPDVVVAKDGTGQFKTIGEALKLVEKKSEKRFSVYVKEGSYVENIDLDKNTWNVMIYGDGKDKTVVVGSRNFIDGTPTFETATFAVKGKGFIAKDIGFVNNAGASKHQAVALRSGSDRSVFYRCSFDGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQSCKIMPRQPLPNQFNTITAQGKKDPNQNTGIIVQKSTITPLGNNLTAPTYLGRPWKDFSTTVIMQSDIGSFLKPVGWMSWVPNVEPASTIFYAEYLNSGPGSDVSQRVKWAGYKPTLTDSDAGKFSVQSFIQGPDWLPNADVQFDSTL* 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00335 1192 FunFam Pectinesterase 878 1192 - -
Lapu10g00335 1192 NCBIfam pectinesterase inhibitor domain 68 237 IPR006501 GO:0004857
Lapu10g00335 1192 NCBIfam pectinesterase inhibitor domain 673 843 IPR006501 GO:0004857
Lapu10g00335 1192 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 238 IPR035513 -
Lapu10g00335 1192 Gene3D Invertase/pectin methylesterase inhibitor family protein 683 844 IPR035513 -
Lapu10g00335 1192 FunFam Pectinesterase 75 238 - -
Lapu10g00335 1192 ProSitePatterns Pectinesterase signature 1. 322 341 IPR018040 -
Lapu10g00335 1192 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 685 844 IPR035513 -
Lapu10g00335 1192 FunFam Pectinesterase 291 608 - -
Lapu10g00335 1192 Coils Coil 148 168 - -
Lapu10g00335 1192 Pfam Pectinesterase 884 1177 IPR000070 GO:0030599|GO:0042545
Lapu10g00335 1192 Pfam Pectinesterase 297 593 IPR000070 GO:0030599|GO:0042545
Lapu10g00335 1192 FunFam Pectinesterase 681 844 - -
Lapu10g00335 1192 Gene3D - 291 608 IPR012334 -
Lapu10g00335 1192 Gene3D - 878 1192 IPR012334 -
Lapu10g00335 1192 PANTHER PECTINESTERASE 44 598 - -
Lapu10g00335 1192 CDD PMEI-like_3 687 843 - -
Lapu10g00335 1192 ProSitePatterns Pectinesterase signature 2. 1028 1037 IPR033131 -
Lapu10g00335 1192 SUPERFAMILY Pectin lyase-like 292 607 IPR011050 -
Lapu10g00335 1192 SMART PMEI_2 680 839 IPR006501 GO:0004857
Lapu10g00335 1192 SMART PMEI_2 74 233 IPR006501 GO:0004857
Lapu10g00335 1192 ProSitePatterns Pectinesterase signature 2. 441 450 IPR033131 -
Lapu10g00335 1192 SUPERFAMILY Pectin lyase-like 881 1189 IPR011050 -
Lapu10g00335 1192 ProSitePatterns Pectinesterase signature 1. 909 928 IPR018040 -
Lapu10g00335 1192 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 238 IPR035513 -
Lapu10g00335 1192 CDD PMEI-like_3 82 238 - -
Lapu10g00335 1192 Pfam Plant invertase/pectin methylesterase inhibitor 685 839 IPR006501 GO:0004857
Lapu10g00335 1192 Pfam Plant invertase/pectin methylesterase inhibitor 78 233 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00335 Lapu-Chr10 5682586 5693605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00335 20 608 Carbohydrate Esterase AT3G14310 71.167 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00335 K01051 - pvu:PHAVU_010G123100g 2097.4