Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00331 ATGGGTCCATCTGCGACCTCCGTGTCTAGTGACAGCACATTGGGTGAATCTGGTCCAATTGAGATAACTGGGAAGATCATGGTGGTGGCTATAATATTCCTTTTCATGGTAGTTGTGTTTGTTCTTGTGCTTCATCTCTATGCAAAATGGTTCTGGTGGAACATGGATGAGAACGCTGCTCCTCAGCCTCACCAGCGGCGGCGGAGGCGCCGTCGGTTTGTCTTCGCCCCCGGGCAAGACTCGGTGATCTATGAGACTCACCAAGTTGGGCTTGACCCTTCAGTTTTAAGGTCCTTGCCAGTGTTGGTGTTCCAACCTGAGGACTTCAAAGAAGGTTTGGAGTGTGCAGTTTGTCTCTCTGAGATTGTTGAAGGGGAAAAGGCCAGACTTTTGCCCAAATGCAATCATGGGTTTCATGTTGACTGCATTGACATGTGGTTCCATTCACACTCCACTTGCCCTCTTTGTAGGAATCCTGTTGCTTTTGAATCCTCTAAAACAAGTGAAGAGAATAATTTCGCAGGGAACAGTGAGTCGTCGTCGTCATCACATGAAGAGAATTCTGGTGCTGTGAATGGCTTGGAGTCCTCAAATTTTCCCACAAATGTATTGGTTTGGGGGAACCAGACGCAAGTTAGTTCTTATGGGGTTTCCTTGCAAGAGGAAGAAGGGAGTTCTCAGCTGCCACCTTGTTCTCCATCATCTACACCAGCTTCTTCTTCAGATGGTGGTGGTAATGTTAATGGTAGGTGTCATGGAATGTTGGTGATTGATATTCCAAGTGAGTGTACCTCCTCCTCTTTATCCCCTTCTGGAAGTAGGTGTGCTGAAGATGAGGTGAAATCACCAATGGCTGCCACATTGAGGTCATTTAAGAGGCTTTTGAGCAGGGACAAAAAGTTAAGTCCTTGTAGTCCAAGTTCTGTAGATGTGGAACAAGCACAGAGCTAG 951 0.469 MGPSATSVSSDSTLGESGPIEITGKIMVVAIIFLFMVVVFVLVLHLYAKWFWWNMDENAAPQPHQRRRRRRRFVFAPGQDSVIYETHQVGLDPSVLRSLPVLVFQPEDFKEGLECAVCLSEIVEGEKARLLPKCNHGFHVDCIDMWFHSHSTCPLCRNPVAFESSKTSEENNFAGNSESSSSSHEENSGAVNGLESSNFPTNVLVWGNQTQVSSYGVSLQEEEGSSQLPPCSPSSTPASSSDGGGNVNGRCHGMLVIDIPSECTSSSLSPSGSRCAEDEVKSPMAATLRSFKRLLSRDKKLSPCSPSSVDVEQAQS* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00331 316 CDD RING-H2_EL5-like 114 157 - -
Lapu10g00331 316 MobiDBLite consensus disorder prediction 215 249 - -
Lapu10g00331 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 184 - -
Lapu10g00331 316 MobiDBLite consensus disorder prediction 167 194 - -
Lapu10g00331 316 SMART ring_2 115 156 IPR001841 -
Lapu10g00331 316 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Lapu10g00331 316 Pfam Ring finger domain 114 157 IPR001841 -
Lapu10g00331 316 MobiDBLite consensus disorder prediction 215 246 - -
Lapu10g00331 316 SUPERFAMILY RING/U-box 95 163 - -
Lapu10g00331 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 162 IPR013083 -
Lapu10g00331 316 FunFam RING-H2 finger protein ATL3 83 162 - -
Lapu10g00331 316 MobiDBLite consensus disorder prediction 263 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00331 Lapu-Chr10 5648327 5649277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00331 7 299 C3H Transcription Factor Family AT1G53820 41.667 6.69e-66 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00331 - - gmx:100775523 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00331 10 5648327 5649277 Lapu10g00331 10 5648327 5649277 ECH