Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00325 ATGATGACCACCAACACCAATATCAAACACAACAACAACAGCAGCAACGTTGGAGAATTTGGGGACACCACTCTGACCAAGGTTTTTGTTGGGGGCTTAGCATGGGAGACTCCCAAGGATGCCCTCAGAGACCATTTTGAGAAGTATGGTGAGATCCTTGAAGCTGTCATAATTTCTGATAAGCTCACTGGCAAATCCAAAGGCTATGGCTTTGTTACTTTCAAAGAGGCTGAGGCTGCCAAGAAGGCTTGCGAGGACTCAGCAACTCTTGTCATCAATGGCCGTCGAGCTAACTGCAATCTGGCTTTCTTGGGTGCTCGTCGTCCAAGGTCTTCTTCCACTGCTTCACCACCTCCACAACCACAAGGAGGATCGAACAGTGGATTGGTGAAGAACAATGCAGCAGGGAATCACGTGCAGCCATATTATCAGCCACTGAGAACCTCTGCTATGCCCTTCCACAATCACCCTCTTCCTTTCTATGGGTACACTCCAACCTACATTGTGACAGATGTAAACTACAATTACAACCAGAAGCTGAGCTATGGCAGCGGTGGGGCCTACATGAATGGCCAGCAGTTTTCTCATGTGTACCCGAGGCAGGGTATTGTGGGTGGCAACACAGTAATGCCAGTGTACCCTCTCTATCAGTATCATCATCCAACGGAGACCATAGGCCTACCAGCTCACAACTTTTATCCAACGGCACCCTGGGCCCCATTCACCATCATTTCCAAACCATCCTCTATCATTCCTCATACAGGTACAGTTGGCACAGGCGAGTGCTTT 789 0.4892 MMTTNTNIKHNNNSSNVGEFGDTTLTKVFVGGLAWETPKDALRDHFEKYGEILEAVIISDKLTGKSKGYGFVTFKEAEAAKKACEDSATLVINGRRANCNLAFLGARRPRSSSTASPPPQPQGGSNSGLVKNNAAGNHVQPYYQPLRTSAMPFHNHPLPFYGYTPTYIVTDVNYNYNQKLSYGSGGAYMNGQQFSHVYPRQGIVGGNTVMPVYPLYQYHHPTETIGLPAHNFYPTAPWAPFTIISKPSSIIPHTGTVGTGECF 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00325 263 MobiDBLite consensus disorder prediction 108 131 - -
Lapu10g00325 263 SMART rrm1_1 27 100 IPR000504 GO:0003723
Lapu10g00325 263 FunFam Putative RNA-binding protein ARP1 20 110 - -
Lapu10g00325 263 SUPERFAMILY RNA-binding domain, RBD 22 124 IPR035979 GO:0003676
Lapu10g00325 263 Gene3D - 3 116 IPR012677 -
Lapu10g00325 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Lapu10g00325 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 95 IPR000504 GO:0003723
Lapu10g00325 263 PANTHER BOULE-RELATED 12 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00325 Lapu-Chr10 5602563 5604390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00325 22 167 C2H2 Transcription Factor Family AT2G19380 29.221 3.10e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00325 - - vra:106778170 456.062