Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00316 ATGCTATCAAACCCACTTCACTGTTGTTTGATTCTTTTCTTCTTTCAATTTGTGATGCCAGCGAAATCATTGTTCAAATCCGATGACCCAGAATGGTTTTTCTTCAGTTCTGTGGATTACAAGTACTCCAATAGTAAAAGGCTCAACAGGACAACCAAGAATGGCTTCTGGAAATCCACTGGAAATGACCGTAACATTAGGACTAGTGGCAGTAACAGTGTCATTGGGACAAAGAAGACTCTTGTTTTCCACGTAGGCCGTGTTCCCCATGGTACCAAGACCAACTGGGTTATTCATGAATATCGTGCTCTTACCTCCCATGAAAGCCAGAAGACTTTCGTTTTATGCCGCTTGATGAAGAAAGTTGAGAAAAAAAATGAAGGGGGAATTGAGGCACCAAACTTTCATGGAGGCGAGTACAGCATAAGCATGGCTTCTGAAGAAATTCCATCTGGTGATATTTTACCTACAGTGATTGTGGATCCATTCATTCCGGAAGCGATTTTATTCCCGCCAGTACAACAGCCTCCTGTTGGTATTGAACTGGGAGGAATTTTCCCAGAGTCCCCATCGTTCATTGCTTGTTTTGGAAATGAAAGCATCAATATGCAAATTCCATTTGGAGTTACTGATGATGATGATGATGAGTTCGTAAATTCAATATTGGCTGATAATGAGGAGTTTATTATCAATGAAGAAAGAAGAGACTGTTTTGTCAATTGTTCCACCCAACCAAAGTCATTGAGAAGGGTATACAATGCAAACAATGACTCAGAAGCTGAAGTTGTCTCTAATCTGCATGACGACATTTGTGCTGGTCTATACACTGTCCACGGTCGCATGAGTGGTCTAGCTTCTAACCATGAAGCAAACAAAGAAAAAAAGGAGAATGACATTCAAGATGATTTCTGGGCAGTGGAGACATCCTCTTGTGACTCAACTGCAGATGAGCCAATTGAAATTTCTAGTTCTTCCTCCACTCCAACAAGATTGGAAAATCGGTATAATCTAAGACCAGACAACTTCATATTACAAAAAGCTGTTGCCGGAAGACCTCAATCGCAGAAGAAGGTTTCAAACAATGCAGTATCCCACGTTGAGGCTCGAAAGGAATTGGTCTCTGTGAGATCAGAGAAAGATCAGAAAAATGCTGAAAATACTAGTTCAAGGGGGATCCTCAAAGTCAGAAGCCATCGATCCTCTGATGTCAATAGAAAAAGTTCTTTCTTTTACATGGAAACGACTTCATCAAACCAAAACCTATTTCCACGTTCAGTATATCTTGTCAATGTTGTCATAGGGATTCTGTTGTTAATATTCATTAGTTGGGAGGTATTATTATGTTAG 1347 0.4024 MLSNPLHCCLILFFFQFVMPAKSLFKSDDPEWFFFSSVDYKYSNSKRLNRTTKNGFWKSTGNDRNIRTSGSNSVIGTKKTLVFHVGRVPHGTKTNWVIHEYRALTSHESQKTFVLCRLMKKVEKKNEGGIEAPNFHGGEYSISMASEEIPSGDILPTVIVDPFIPEAILFPPVQQPPVGIELGGIFPESPSFIACFGNESINMQIPFGVTDDDDDEFVNSILADNEEFIINEERRDCFVNCSTQPKSLRRVYNANNDSEAEVVSNLHDDICAGLYTVHGRMSGLASNHEANKEKKENDIQDDFWAVETSSCDSTADEPIEISSSSSTPTRLENRYNLRPDNFILQKAVAGRPQSQKKVSNNAVSHVEARKELVSVRSEKDQKNAENTSSRGILKVRSHRSSDVNRKSSFFYMETTSSNQNLFPRSVYLVNVVIGILLLIFISWEVLLC* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00316 448 Coils Coil 365 385 - -
Lapu10g00316 448 Gene3D NAC domain 17 126 IPR036093 GO:0003677|GO:0006355
Lapu10g00316 448 SUPERFAMILY NAC domain 22 121 IPR036093 GO:0003677|GO:0006355
Lapu10g00316 448 MobiDBLite consensus disorder prediction 374 399 - -
Lapu10g00316 448 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 26 340 - -
Lapu10g00316 448 Pfam No apical meristem (NAM) protein 26 102 IPR003441 GO:0003677|GO:0006355
Lapu10g00316 448 ProSiteProfiles NAC domain profile. 1 121 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00316 Lapu-Chr10 5514305 5517692 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00316 19 153 NAC Transcription Factor Family AT4G35580 43.151 7.49e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu10g00316 NAM 5.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00316 - - gsj:114390609 543.117