Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00312 ATGGCCATTGTTGGTGTCGGTTTCCGTCCCACAGAACAAGAACTTGTAGAATTCTACCTCAAACACAAGTTGCTCGCTGATGATCCCCGTGTCCACGTCATCCCTGTCATTGATCTCTGCGATGTGGAACCTTCGGATGTACCAGGGATACTTGCAAGATCACCGATACGATTTGGTAACCCAGAATGGTTTTTCTTCAGTCCTGTTGATTTCAAGTATTCAAACAGTAAAAGGGTTAATAGGAAAACCAAGTGTGGCTTCTGGAAAGCCACTGGAAAAGACCGTGACATTAGGAGCAGGAACACCAACACTCGCATTGCCACAAAGAAGACTCTTGTTTACTACAACGGCAGTGTTTCCTGTGGTGTCAACTCCAACTGGATTATTCACGAATATCATGCTGTTACCTTTCATGAAAGCAAGAGGACTTTTGTTTTATGCCGCTTGATGAAGAGACCTGGGAAAACAGCGGAAAGCGGAACTGATGCACTAATCTGTGATGAAGGGGTCCCCAGTAATGTCAGAGTTTCTGAATATGAAATTCAGGCAACAGCAGAAGGAATTCCATCTGGAGGTCCTTTTACTGGAGTAGAAACAATCTTTCAGACTACACCTCAGGCAGTGACACACTTCTCGCCTACACAATTGTCTCCAACTGGTATTGAGCAAGAAGAAGCATCTTTTCAAGATTATACATTAAATAATGCCTATTTTGAAAATGAAAATAGCATTATGAAGAATTCATTTGGAACTACAAAGGAAGATGAGTTCCTGAATCACATCATAGCTGATGAAAGTTTAGTTATTGATGAAGAAAGTATATATACTTTTGTGGGTAACACCCTTCAATCAGAGTCATTGCAAGGATTATATTTTGAAAACAGTGATACAGATACAGAAGTGATGTCTAAACTGGACGCTAATTTTGTGGAAAGTTCAGTCGTGTCTCGTGAATATCCTAATATTGAAGAATATCATTTATCAAAAAAGCTTAAATTATCACTAGATGTTGTTGATGATGTATGTTTTCCGTCTTCTGGCTATGAAGCAAATCGACCATTAAAAGAGAGTATGTTTCAAGATAACTTCTCAGCAGTGGAGTCATCTTCTTGTGACTCATCTTCAAATTGA 1131 0.3961 MAIVGVGFRPTEQELVEFYLKHKLLADDPRVHVIPVIDLCDVEPSDVPGILARSPIRFGNPEWFFFSPVDFKYSNSKRVNRKTKCGFWKATGKDRDIRSRNTNTRIATKKTLVYYNGSVSCGVNSNWIIHEYHAVTFHESKRTFVLCRLMKRPGKTAESGTDALICDEGVPSNVRVSEYEIQATAEGIPSGGPFTGVETIFQTTPQAVTHFSPTQLSPTGIEQEEASFQDYTLNNAYFENENSIMKNSFGTTKEDEFLNHIIADESLVIDEESIYTFVGNTLQSESLQGLYFENSDTDTEVMSKLDANFVESSVVSREYPNIEEYHLSKKLKLSLDVVDDVCFPSSGYEANRPLKESMFQDNFSAVESSSCDSSSN* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00312 376 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 240 - -
Lapu10g00312 376 Pfam No apical meristem (NAM) protein 4 133 IPR003441 GO:0003677|GO:0006355
Lapu10g00312 376 SUPERFAMILY NAC domain 4 152 IPR036093 GO:0003677|GO:0006355
Lapu10g00312 376 Gene3D NAC domain 11 156 IPR036093 GO:0003677|GO:0006355
Lapu10g00312 376 ProSiteProfiles NAC domain profile. 2 152 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00312 Lapu-Chr10 5488948 5492149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00312 4 153 NAC Transcription Factor Family AT4G35580 46.452 3.41e-38 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu10g00312 NAM 2.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00312 - - gmx:100780890 482.256