Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00311 AACACTGAGCTTTCTTCATTTTCCTTTGTTAGTTGTTGCCTCACCACCTTCCCTTCCCATTTTCCCTTTGCTACAAACTACAAAGTTAAGTGTTCACCACAACCAATGGAGATCATAGGATTCGGTTTCCGTCCCACAGAAGAAGAACTTGTCGACTATTACCTCAAACATAGGTTGCTCGGTGATGATCCACGTGTCCACGTCATCCCCGACATTGACCTTTGTGAAGTGGAACCTTGGGAAGTACCAAAGTTATTAGCGGCATCAGATGTGCAATTCGATCTGCCAGAATGGGTTTTCTTCAGTCCTGTTGATTTCAAGTATTCAAATAGTAAAAGGTTTAACAGGACAACCAAGTGTGGCTTCTGGAAACCCACTGGAAAAGATCGTGACATTAGGAGCGTGGACACCAACACTCTCATTGCCACAAAGAAGACTCTTGTTTACTATAAAGGTCGCGTT 462 0.4351 NTELSSFSFVSCCLTTFPSHFPFATNYKVKCSPQPMEIIGFGFRPTEEELVDYYLKHRLLGDDPRVHVIPDIDLCEVEPWEVPKLLAASDVQFDLPEWVFFSPVDFKYSNSKRFNRTTKCGFWKPTGKDRDIRSVDTNTLIATKKTLVYYKGRV 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00311 154 SUPERFAMILY NAC domain 37 153 IPR036093 GO:0003677|GO:0006355
Lapu10g00311 154 ProSiteProfiles NAC domain profile. 37 154 IPR003441 GO:0003677|GO:0006355
Lapu10g00311 154 Pfam No apical meristem (NAM) protein 40 153 IPR003441 GO:0003677|GO:0006355
Lapu10g00311 154 Gene3D NAC domain 46 154 IPR036093 GO:0003677|GO:0006355
Lapu10g00311 154 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 39 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00311 Lapu-Chr10 5486484 5487060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00311 39 153 NAC Transcription Factor Family AT4G35580 54.783 1.98e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu10g00311 NAM 2.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00311 - - vun:114165637 221.476