Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00308 ATGGAGTTCATGCAAGAAGTGAAAGGGTATTCCGATAGCAGAGAGGAGGAGGAGGAAGAGGAAGCAGCAGAAGAAATCATCACTAGAGAAGAAAGCAGCAGTAAGCACCACTACCCCTTTTCTTCTCCCTCTTTGTCTTTATCTTCTGCTCCTTCAATATCAAATTATACTTCCACTACTTCTGCTGCACGTCCTCATCACCATCATCATGTAATAAATATTCCTCACCAACAAAATCCATGGCTGGGGATGAATATTCATGATCATGATCATCATCTTCAGTCTCCAGAGACCACTGAATCTCACAATTCATCATCTGGGTTAGGGTTGTTACACCAGCACCAGGATGCAGCAGGTTCCAATTTCATCATCAGCAATCATCACCATCATCACCGCACAACAAATCAGCTAGACTTCATGGACTTGACACTGGGGAGCAGCAAGGATGAAGGGAATTTGCAAGGATCAGGAGGTGGTGCTTCTTCTGTGTATGCTCATCATGCAAGTGGCAGTTCTTCTGCCAATGGTAACATTAACAACCTGCAACAGCCTTCTGAGAAGGAGCACATGTTTGACAAAGTTGTGACACCAAGCGATGTGGGGAAGCTGAACCGGTTGGTGATACCAAAGCAGCATGCTGAGAAGTATTTCCCTCTTGATTCCTCAGCCAATGAGAAGGGGCTGCTGCTCAATTTTGAGGACAGGAACGGTAAGTTATGGAGGTTCAGGTACTCCTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTTGACGCTGGTGACATTGTGTCCTTCCAGCGTGGTGTTGGGGAATTGTATAGGCATAGGTTGTACATAGATTGGAGGAGAAGGCCTGATCACCATCACCATCATGGCCCTGACCCTTCAACCACACTCTTCACACCTTTCTTTCTTCCCAATCAGCCTCACTTAATGTCCATCAGATGGGGTTCCACTGGCAGATTGTACTCCCTCCCCTCGCCAAATCCACCACGCCACCACGACCATTTGCAGCAACACCTCAATTACAACACCATGTATCATCAACAACATCATCATCCCTTTCATCACCAATTGCAAGGTGGTGGTGGTGGTGGAAATGGAACTCATCACTACAACTATCATGACATGACTACTTCAGGATCTGGCTCAGTCTATTACCTCAGGTCAACTCCCCCACCAATGCCATTGACTGATCACCAAACCTTGAACACGAGGCAACAACAAGAGGGAGGGAATGTTTCTCACCCTCCTATAATCATTGATTCTGTTCCAGTTGCTCACCACCACCATCATCACCACCACCATGGTGGCAAGAGTGGTTCTAGTACTAGTACTAGTCCAAGCACTGCAGGCAAAAGACTTAGGCTGTTTGGGGTGAATATGGAATGTGCTTCTTCAACATCAGAAGACCCCAACTGCTTCAGCTTATTGTCCTCATCTTCAATGGGACATGCGACAATGACTAATTCCAATTCACCTCCCTCTTCTTCACTACCACCTCTTCAGCTTTTGAGGGAAGACTCACTTTCATCACCATCATCAGCAAGGTTTGGGGATCAGAGAGGGGAACCTTCAATGCTTTTTGATCTGGATCCTTCTTTGCAATACCGGCAGTGA 1653 0.4658 MEFMQEVKGYSDSREEEEEEEAAEEIITREESSSKHHYPFSSPSLSLSSAPSISNYTSTTSAARPHHHHHVINIPHQQNPWLGMNIHDHDHHLQSPETTESHNSSSGLGLLHQHQDAAGSNFIISNHHHHHRTTNQLDFMDLTLGSSKDEGNLQGSGGGASSVYAHHASGSSSANGNINNLQQPSEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELYRHRLYIDWRRRPDHHHHHGPDPSTTLFTPFFLPNQPHLMSIRWGSTGRLYSLPSPNPPRHHDHLQQHLNYNTMYHQQHHHPFHHQLQGGGGGGNGTHHYNYHDMTTSGSGSVYYLRSTPPPMPLTDHQTLNTRQQQEGGNVSHPPIIIDSVPVAHHHHHHHHHGGKSGSSTSTSPSTAGKRLRLFGVNMECASSTSEDPNCFSLLSSSSMGHATMTNSNSPPSSSLPPLQLLREDSLSSPSSARFGDQRGEPSMLFDLDPSLQYRQ* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00308 550 Gene3D - 185 303 IPR015300 -
Lapu10g00308 550 SUPERFAMILY DNA-binding pseudobarrel domain 187 292 IPR015300 -
Lapu10g00308 550 MobiDBLite consensus disorder prediction 1 66 - -
Lapu10g00308 550 MobiDBLite consensus disorder prediction 496 550 - -
Lapu10g00308 550 CDD B3_DNA 189 278 IPR003340 GO:0003677
Lapu10g00308 550 MobiDBLite consensus disorder prediction 150 189 - -
Lapu10g00308 550 MobiDBLite consensus disorder prediction 496 530 - -
Lapu10g00308 550 Pfam B3 DNA binding domain 191 295 IPR003340 GO:0003677
Lapu10g00308 550 MobiDBLite consensus disorder prediction 80 109 - -
Lapu10g00308 550 SMART B3_2 191 296 IPR003340 GO:0003677
Lapu10g00308 550 MobiDBLite consensus disorder prediction 150 185 - -
Lapu10g00308 550 MobiDBLite consensus disorder prediction 438 462 - -
Lapu10g00308 550 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 14 485 IPR044800 GO:0003700
Lapu10g00308 550 MobiDBLite consensus disorder prediction 37 62 - -
Lapu10g00308 550 FunFam B3 domain-containing protein 184 304 - -
Lapu10g00308 550 ProSiteProfiles B3 DNA-binding domain profile. 191 296 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00308 Lapu-Chr10 5454169 5463070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00308 182 478 RAV Transcription Factor Family AT2G46870 49.498 1.84e-78 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu10g00308 B3 2.9e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00308 K09287 - gmx:100781424 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00308 10 5454169 5463070 Lapu10g00308 10 5454169 5463070 ECH