Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00299 ATGGCTCCATCACAGGAAACCAATAGCGGAGAAGCCATGCAACTTAAACACGTTGAAGAAGACCAAGATGGCATCCTCTTTGCCCTGAACATGGTTTCTTCTGTGATGTACCCTCTTGCGGTTAAGGCCGCGATTGAGCTTGGTATCTTTGACATCATGGCCAAAGCAGGTGAAGGTGCGAAGCTCTCAGCAGAAGAGATTACAGAAAAAGTTGGGGCAAAGAACCCGGATGCACCAACTATGGTGGAACGGATTCTGAGGTTATTGGCTAGTCACTCCATGCTATCTTGCTCTCTTGGCGAAGATGGCCCAAATTCTGGCAAGAGGCTCTATAGCCTCACCTATGCATCCAAGTATTTTGTTGCTGATACCGATGGTGTCTCATTTGGAGCTTCCTTGAACCTGGTTCTTGGCAAGGTCTTCTTGGAAACCTGGACCGAGCTGAAAGGATCCATCGTAGAAGGTGGCATAGCATTCAACAGGGTTTATGGGATGAACGCATTTGAGTATCCAGCTGTGGATCCTGGGTACAATGATGTTTTCAACAAAGCTATGTTCAACATTACCACCATAATCACAAATAGGGTTCTTGAGCTCTACGATGGTTTCAAGAACATTAACAGGCTCGTGGATGTTGGTGGTGGTCTTGGGATCAATCTCAAACTAATCACTTCTAAATATCCCAATGTTCAGGGTGTTAATTTTGACTTGCCACATGTCATAGAACATGCCCCTACCTACCCTGGTGTGGAACATGTAGCAGGAGATATGTTTGAGAGTGTTCCCAGTGGAGACGCCATTTTTATGAAGTGGATACTTCACGATTGGAGTGATGAACACTGTTTGAAGTTATTGAAGAATTGCTATAAAGCTATTCCGAGTGATGGAAAAGTGATTGTTGTGGACTTGATTATTCCCGCTTTGCCGGAGAGTACAACTACTGCAAGAACTGGTTTCCAAGCTGACCTTTTGATGATGGCTCAAAACCCAGGAGGAAAAGAAAGAACCCAAAATGAGTTCATGGAACTGGCATTATCTTCTGGATTCAGTGGCATCAGATTCGTTTCTTCTGTCTCTGGCTTCTGGGTTATGGAGTTTTTCAAG 1104 0.4466 MAPSQETNSGEAMQLKHVEEDQDGILFALNMVSSVMYPLAVKAAIELGIFDIMAKAGEGAKLSAEEITEKVGAKNPDAPTMVERILRLLASHSMLSCSLGEDGPNSGKRLYSLTYASKYFVADTDGVSFGASLNLVLGKVFLETWTELKGSIVEGGIAFNRVYGMNAFEYPAVDPGYNDVFNKAMFNITTIITNRVLELYDGFKNINRLVDVGGGLGINLKLITSKYPNVQGVNFDLPHVIEHAPTYPGVEHVAGDMFESVPSGDAIFMKWILHDWSDEHCLKLLKNCYKAIPSDGKVIVVDLIIPALPESTTTARTGFQADLLMMAQNPGGKERTQNEFMELALSSGFSGIRFVSSVSGFWVMEFFK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00299 368 Pfam Dimerisation domain 40 90 IPR012967 GO:0046983
Lapu10g00299 368 PANTHER O-METHYLTRANSFERASE 31 354 IPR016461 GO:0008168
Lapu10g00299 368 Pfam O-methyltransferase domain 145 350 IPR001077 GO:0008171
Lapu10g00299 368 FunFam Caffeic acid 3-O-methyltransferase 6 120 - -
Lapu10g00299 368 CDD AdoMet_MTases 208 305 - -
Lapu10g00299 368 FunFam Caffeic acid O-methyltransferase 121 368 - -
Lapu10g00299 368 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 368 IPR016461 GO:0008168
Lapu10g00299 368 Gene3D Vaccinia Virus protein VP39 122 368 IPR029063 -
Lapu10g00299 368 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 128 366 IPR029063 -
Lapu10g00299 368 PIRSF O-mtase 5 368 IPR016461 GO:0008168
Lapu10g00299 368 Gene3D - 7 120 IPR036388 -
Lapu10g00299 368 SUPERFAMILY "Winged helix" DNA-binding domain 19 123 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00299 Lapu-Chr10 5305401 5308891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00299 14 368 Monolignol Biosynthesis Gene Families AT5G54160 50.843 1.99e-134 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00299 K13066 - gmx:100789402 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00299 10 5305401 5308891 Lapu10g00299 10 5305401 5308891 ECH