Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00297 ATGGAGAGGCTCCAAGGACCCCTCAATTCCTGTTTCTTTGGAGACCCCTTGGGAGTGAATTGTTTGGACCAAGTTCTGGTTCATGAAGAAAGCCTAAGACTAGAAGAGGAAGAGCAGCTTCTGATATCAAGTTTAGAGGACAAGATGCCTTTCCTTCAGATGCTTCAGAGTGTGGAATCCCCTCAGTTTTTCCCTTTGAAAGAACCAAACTTTCAAACACTTCTGAGGCTGCAGCACATTAAGAAACCGTGGGAGGAAATGGCCTATATTCCAAGAATGGAAGCACAAGTTCAAGCAGCATTGGAGCTAGAGAGTTGTGTGACGCACGACATGTTGGAGATGCAGTCACCAGTGAAGTCGGAAAGCAATGAGCTCCAACACCCACGTTCAATTTCGTGTGCTGAGAAAGTGAGCTATGAGTGCAACCAGGAACCACATAAAGTATCACAATCATGCCCCGAATCTCAGCCAGCAGCCTCAAGGGAAAGGAGAAAGAGAAAGAGAACAAGGCCAAGCAAGAACAAGGAAGATGTGGAGAACCAACGCATGACCCACATTGCTGTTGAACGCAACCGGCGACGCCAAATGAATGACCATCTCAGTGTTCTAAGGTCCCTTATGCCTTCTTCATATATTCAAAGGGGTGACCAAGCCTCAATAATTGGGGGTGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAGTCCCTTGAGGCACAAAAGAGGATGAGAAAGAACGAAGAGGGAGATGGTTCTTCTTCCACTATGTTGTGTAAGCCCCCTCCACCACCATCATCATCTTCATCACCACATGGCTATGGGATGAGGTCATCAACCAGTGAGGAAGTGAACTGTGGGGATGAGATGAAGGCAGAAAACAAGTCAGAGGCAGCAGACATAAAAGTAACCTTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCCAAAGGAGACCAGGGCAATTGATAAAGGTCATTGTTGCTTTGGAGGAACTTAGGCTAACCATTCTCCACCTCAACATCACCTCCTCAGAGACTTCTGTCCTTTACTCCCTCAATCTCAAGATTGAAGAGGGCTGTAACCTACGTTCAGCAAGTGACATTGCAGAAGCAGTTCATCATATATTCAACTTCATTAATGGTAGCTAG 1152 0.4583 MERLQGPLNSCFFGDPLGVNCLDQVLVHEESLRLEEEEQLLISSLEDKMPFLQMLQSVESPQFFPLKEPNFQTLLRLQHIKKPWEEMAYIPRMEAQVQAALELESCVTHDMLEMQSPVKSESNELQHPRSISCAEKVSYECNQEPHKVSQSCPESQPAASRERRKRKRTRPSKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPSSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRKNEEGDGSSSTMLCKPPPPPSSSSSPHGYGMRSSTSEEVNCGDEMKAENKSEAADIKVTLIQTHVNLKIECQRRPGQLIKVIVALEELRLTILHLNITSSETSVLYSLNLKIEEGCNLRSASDIAEAVHHIFNFINGS* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00297 383 SMART finulus 186 237 IPR011598 GO:0046983
Lapu10g00297 383 FunFam Basic helix-loop-helix transcription factor 171 246 - -
Lapu10g00297 383 PANTHER TRANSCRIPTION FACTOR FAMA 114 377 IPR044283 GO:0003700|GO:0010052
Lapu10g00297 383 MobiDBLite consensus disorder prediction 242 293 - -
Lapu10g00297 383 CDD bHLH_AtFAMA_like 183 256 - -
Lapu10g00297 383 Gene3D - 170 248 IPR036638 GO:0046983
Lapu10g00297 383 Pfam Helix-loop-helix DNA-binding domain 181 232 IPR011598 GO:0046983
Lapu10g00297 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 231 IPR011598 GO:0046983
Lapu10g00297 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 248 IPR036638 GO:0046983
Lapu10g00297 383 Coils Coil 228 251 - -
Lapu10g00297 383 MobiDBLite consensus disorder prediction 145 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00297 Lapu-Chr10 5285371 5289410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00297 39 382 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 41.040 1.84e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu10g00297 HLH 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00297 - - gmx:100789928 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00297 10 5285371 5289410 Lapu10g00297 10 5285371 5289410 ECH