Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00294 ATGGCTGAGTTGAGTGGTATGATGCAAGAACACGGGACGAACAACATTGGCGATCGCACTGCAGAGGTGGTTCAGTGGGAGAGGTTTCTGCCGCGGATGGTGCTTAGAGTCCTGCTTGTAGAAGCTGATCATTCCACTAGACAAATCATCGCTGCACTTCTTCGCAAATGCAGTTACACAGTTATCGCGGTTCCAGACGGATTAAAGGCATGGGAATTGTTGAAGAGGAAGGCGTCTGAGCTAGATCTCATAATAACTGAAGTAGATCTGCCAGCAATATCCGGATTTGCACTTCTGTCTTTAATCATGGAGCATGAAATTTGTAAAAATATTCCTGTCATAATGATGTCTTCTCATGATTCTGTAAGCATGGTGTTGAAATGCATGCTAAAAGGGGCAGTTGATTTTCTTATAAAGCCTATTCGGAGGAATGAACTTGGGAACTTGTGGCAGCATGTATGGAGAAGGCACGCTAGTAGCACTCCTACTCAAAATACAATATTTTCACCAAAAAATCTTAAAACTGCCTCCGAAGACAATTCTGCTAGCAATAAATCTAGTGATTCTGTGGCTTCCTCTAAGAAAAACAACGAATGCACTGAGAGATTAACTGAGGCTCAAGACGTGCCCCAGCTAAAAAGTTCTAAACAGAAGAAACATGATTTGGTGAAGCATGAAAAGTTTGCCAGATTTGAAAGTGAATCAGATAAGATTAATAATGAAACAAGAGATAAATCAATTACAATTGTATCAGACTCTGCAAGGTGCGACAAAACTTTTGAATCGGCGGATTTAAGGCTAGAACAAGACCATGGTTGTGCTGAAACTGAAATTGAGGTTGAAATCTTAAAATCTGAGTTAGGCATAGGAGATTCTAATATTAGTACTGAGTTGCATGGATGCAGTGATGAACGGGAGAAACCTTTTAAAGGAGCTATTGACTTGATTGCCACATTTGGAAATCTTCCAAAGCACCCTGATGAAAACTGTAGTCTCAATGGTGGTAATACAACCAAGTTTGATGATGGTGTTACGCAATTGGAACTTTCTTTAAGAAGTGATTTTCCTGGAAGCTCATCTAAACAAGCAAGCGAAGCAACTGAGGAATCTCAAAGATTGAACCATTCGAACACTTCTGCGTTTTCTTGGTATAGTAATAGTAAATTGATACACCCTCTTTTTCGAACACCATCAATTACATCCGCCGAAGTAAACAATCCCAGTTGGGATTCTCATGAATCCCATAAATTGTCTCGAAGTACTTCTGGAAATTGTTGCCAGTATGGTGGCTCAAATCAAAACCTGGAGAATATGATCAGTACAGTCATTGATCAGCATGGACAAGTTGAGCCAAACTTATCGGACAGTCAATGTGGAATTTTACCTGTTTCAGGGGTTATTTCCGATCTTAAGTCCAAGGGACATGGTAATGTTTTCACTTCTGTGTTCTACGCACCATCTGGTACTCTCCCTGTGTGGAGTCCGAAACCGGTCTGCCAGAACGAGAGTTATCCCTTTCCCACAAGTTCCTCCTCCCAGTCCAATCCTGATAGTCACAACTCTGACCAATATCACGACTGTTCCAATGATGCTACTTGTCTTAACCAAAATGTTAAGGAAGACACTGATCTGGATCACGCAAGGCATGATTCTCCTGCTGCTGATCAGAGTGGTGGTAATAGTTTATGCCATGATGCTTCATATCATGTCAATAGTAGTGCGTATGGAAGCATGGACAGTGGGAATGATGGGAATGCTACTTCAGCTATAGTATCCAAGAACAACGCAGAAGGCTTCAGTCATAGTGTTTGTCATAATTATGATGGGTCTCGAGCCACAGATTCTCATCGCACTAGTCAAAGAGAAGCAGCTCTAACCAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTCGAGAAAAAGGTTCGATACCAAAGCCGAAAAAGACTGGCTGAGCAGCGGCCTCGGGTCAAAGGGCAGTTTGTACGCCAAGTACACAATGATCATCCAGTTGCTGATGCTGGTGGTGATTCATGA 2034 0.4204 MAELSGMMQEHGTNNIGDRTAEVVQWERFLPRMVLRVLLVEADHSTRQIIAALLRKCSYTVIAVPDGLKAWELLKRKASELDLIITEVDLPAISGFALLSLIMEHEICKNIPVIMMSSHDSVSMVLKCMLKGAVDFLIKPIRRNELGNLWQHVWRRHASSTPTQNTIFSPKNLKTASEDNSASNKSSDSVASSKKNNECTERLTEAQDVPQLKSSKQKKHDLVKHEKFARFESESDKINNETRDKSITIVSDSARCDKTFESADLRLEQDHGCAETEIEVEILKSELGIGDSNISTELHGCSDEREKPFKGAIDLIATFGNLPKHPDENCSLNGGNTTKFDDGVTQLELSLRSDFPGSSSKQASEATEESQRLNHSNTSAFSWYSNSKLIHPLFRTPSITSAEVNNPSWDSHESHKLSRSTSGNCCQYGGSNQNLENMISTVIDQHGQVEPNLSDSQCGILPVSGVISDLKSKGHGNVFTSVFYAPSGTLPVWSPKPVCQNESYPFPTSSSSQSNPDSHNSDQYHDCSNDATCLNQNVKEDTDLDHARHDSPAADQSGGNSLCHDASYHVNSSAYGSMDSGNDGNATSAIVSKNNAEGFSHSVCHNYDGSRATDSHRTSQREAALTKFRLKRKERCFEKKVRYQSRKRLAEQRPRVKGQFVRQVHNDHPVADAGGDS* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00294 677 CDD psREC_PRR 37 140 - -
Lapu10g00294 677 MobiDBLite consensus disorder prediction 161 221 - -
Lapu10g00294 677 ProSiteProfiles CCT domain profile. 621 663 IPR010402 GO:0005515
Lapu10g00294 677 MobiDBLite consensus disorder prediction 161 211 - -
Lapu10g00294 677 SMART REC_2 35 150 IPR001789 GO:0000160
Lapu10g00294 677 Pfam CCT motif 621 663 IPR010402 GO:0005515
Lapu10g00294 677 Pfam Response regulator receiver domain 37 146 IPR001789 GO:0000160
Lapu10g00294 677 SUPERFAMILY CheY-like 35 162 IPR011006 -
Lapu10g00294 677 Gene3D - 33 269 - -
Lapu10g00294 677 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 313 IPR045279 GO:0009736
Lapu10g00294 677 MobiDBLite consensus disorder prediction 352 375 - -
Lapu10g00294 677 ProSiteProfiles Response regulatory domain profile. 36 154 IPR001789 GO:0000160
Lapu10g00294 677 MobiDBLite consensus disorder prediction 504 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00294 Lapu-Chr10 5245251 5250103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00294 584 665 Response Regulator Gene Family AT5G24470 57.317 1.49e-21 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lapu10g00294 Response_reg 3.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00294 K12130 - gmx:100791698 1004.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00294 10 5245251 5250103 Lapu10g00294 10 5245251 5250103 ECH