Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00293 ATGCCACCTTACACCCTATCTCACACTTTCCTTACACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTGTTACCCTTGGAACTCTACAAACCCCAGGTGAAACGATTCGTTTTACATTTCGGGCTTCCAAGGCGTTCACGCACAACTCTACAACCTTCTTCATCGTCTTCTTCATTCTCTCCGCTGAGGAAAACTAGGGAGGTGGTTGAAGAACGGGTTTATGGAGAAGAATCTCGTTACCCTCAAAACGGTAATGTTTTTGCGGAAGAAGAAGATAACGAAAGGCTTGGAAAAGCGTGCGAAGTGTACGTGTGCAATCTCCCCAGAAGCTGCGATGCAGCATACTTACTTGACATGTTCAGGCCATATGGGACCATTCTATCTGTGGAGGTTTGCCGGAATGATGAGACTAATGAAAGTAAGGGGTGTGGTTACGTGACACTGGGATCCATATACTCAGCAAGAAATGCAGTTGCTACATTGGATGGATCAGATGTTGGTGGGCGCGAAATGAGGGTTAGGTTTTCAATTGAGGTGAAATCTAAAAGGAGGGGTTTTAATAAAATGAACGCTTCCACCAAGAGAATCTTATACTACGAATCTTCTCATAAGTTGTATGTTGGCAATCTTCCCAAGACTACTAAACCTGAACAGTTGAGAGATCTCTTTAGCAGATTTGGAAATATAGTTGGTGTTAGAGTATTGCTAGATTTTAAACAAGGGAAAAGCCGAGCCTATGCCTTTCTCTCCTTTCAATCAGAGACGGAACGTGATGCAGCAATGTCTCTCAATGGAACAGAATTTTATGGTCGAACACTAATAGTCAAAGAGGGTGTTGAGAGGAAAGAGCCTTTAACTGAAGCTGAAGCTTCAGTGTCTGCATAA 888 0.4291 MPPYTLSHTFLTPSSSSSSSSSSVLPLELYKPQVKRFVLHFGLPRRSRTTLQPSSSSSSFSPLRKTREVVEERVYGEESRYPQNGNVFAEEEDNERLGKACEVYVCNLPRSCDAAYLLDMFRPYGTILSVEVCRNDETNESKGCGYVTLGSIYSARNAVATLDGSDVGGREMRVRFSIEVKSKRRGFNKMNASTKRILYYESSHKLYVGNLPKTTKPEQLRDLFSRFGNIVGVRVLLDFKQGKSRAYAFLSFQSETERDAAMSLNGTEFYGRTLIVKEGVERKEPLTEAEASVSA* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00293 295 Gene3D - 45 183 IPR012677 -
Lapu10g00293 295 Gene3D - 184 289 IPR012677 -
Lapu10g00293 295 SUPERFAMILY RNA-binding domain, RBD 201 284 IPR035979 GO:0003676
Lapu10g00293 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 173 IPR000504 GO:0003723
Lapu10g00293 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 274 IPR000504 GO:0003723
Lapu10g00293 295 PANTHER OS02G0815200 PROTEIN 17 277 - -
Lapu10g00293 295 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 52 184 - -
Lapu10g00293 295 SUPERFAMILY RNA-binding domain, RBD 96 188 IPR035979 GO:0003676
Lapu10g00293 295 MobiDBLite consensus disorder prediction 1 23 - -
Lapu10g00293 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Lapu10g00293 295 SMART rrm1_1 205 277 IPR000504 GO:0003723
Lapu10g00293 295 SMART rrm1_1 102 175 IPR000504 GO:0003723
Lapu10g00293 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 281 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00293 Lapu-Chr10 5237839 5240780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00293 103 288 Eukaryotic Initiation Factors Gene Family AT2G36660 32.632 1.09e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00293 - - vra:106780336 464.536