Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00289 ATGGGGGGTGGTAACATCAATTCAAGTGAATACAATGATACAACTTTTACCAAAATCTTTGTTGGAGGCTTAGCTTGGGAGACTCAAGGGGACACAGTGAGAAGGTATTTTGAACAGTTTGGAGAGATTTTAGAAGCTGTTGTTATCACAGATAAGAACACTGGAAGATCCAAGGGTTATGGTTTTATCACATTCAAGGATCCAAAGATGGCAATGAAAGCATGCCAAAACCCTTATCCAATAATTGATGGAAGGAAGACAAATTGCAATATTGCATCTATTGGTGCAAACAAGAATCGTAGGCAGGCTCCACAACATGGTCGGGTTAGAGCAGCACCTGGTTTGTTGGCTTCACCTGATTATCATGGTCCTTCCTCTCCATTTGTCCATCAAAACAATGTGCAATACACATTTCCAGATTCAAGTTTTGGATATATTCAACATTCACTTGACATGATGTACCCCATGAACTGTTACGGAATACTTGGAGGGCAACAGTTTTCAGCATACTACCCCTATATTGGGGCATCTGAACCTATAGGATTGGTCCATAACACTTACCCTTTTTCTGCACAATATGCACACAGTAGCCAGGCTCAAGGTTTTGGAGTCCATTATCCCCAAATGATGCAATTTCCAGTTATTCCTGGGAATTATATGTCAGCTGGTATCCTTAGATTTCCTTCTCCAATGGAAATGCCAACTACTAGTGCAGACTTGTACCCTTCCTAA 732 0.4098 MGGGNINSSEYNDTTFTKIFVGGLAWETQGDTVRRYFEQFGEILEAVVITDKNTGRSKGYGFITFKDPKMAMKACQNPYPIIDGRKTNCNIASIGANKNRRQAPQHGRVRAAPGLLASPDYHGPSSPFVHQNNVQYTFPDSSFGYIQHSLDMMYPMNCYGILGGQQFSAYYPYIGASEPIGLVHNTYPFSAQYAHSSQAQGFGVHYPQMMQFPVIPGNYMSAGILRFPSPMEMPTTSADLYPS* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00289 243 SUPERFAMILY RNA-binding domain, RBD 16 104 IPR035979 GO:0003676
Lapu10g00289 243 SMART rrm1_1 18 90 IPR000504 GO:0003723
Lapu10g00289 243 Gene3D - 5 110 IPR012677 -
Lapu10g00289 243 CDD RRM_RBM24_RBM38_like 17 92 - -
Lapu10g00289 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 76 IPR000504 GO:0003723
Lapu10g00289 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
Lapu10g00289 243 PANTHER BOULE-RELATED 8 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00289 Lapu-Chr10 5194528 5196231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00289 6 93 C2H2 Transcription Factor Family AT2G19380 42.045 1.71e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00289 - - gmx:100786226 378.252