Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00285 ATGCCGGAAAACATGAGCATATCTGTGAATGGACAGTCTCAAGTCCCACCTGGCTTCAGGTTCCATCCAACTGAAGAGGAGCTTCTTCAGTACTACTTGAGGAAGAAGGTCTCTTACGAGAAGATTGACCTCGATGTCATTCGTGATGTTGATCTCAACAAGCTCGAGCCGTGGGATATACAAGAGAAATGCAAAATAGGAACCACTCCGCAGAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACCGGAACTCGCACCAATCGCGCCACTGCTGCGGGATTCTGGAAGGCCACTGGCCGTGACAAAGTCATATACAGCAACGGAAAGAGGATTGGAATGAGAAAGACACTGGTTTTCTACAAAGGAAGAGCCCCACATGGCCAGAAATCTGACTGGATCATGCATGAATACAGACTAGACGACAACACCACCAGCGACACCAATATTGTGTCGAATGTGATGGGGGATGGTGGTCAGGAAGAAGGGTGGGTGGTGTGTAGGATATTCAAGAAGAAGAACAATCTGAAAACCCTAGACAGCCCCTTAGGTTCGGGGGAAGGTAGAAGGAGCCACTTGTTCGAGTCGTGCGACGAGGGAGCTTTGGAGCAAATACTTCAGCAAATGGGAAGGGGTTGCAAGGAAGAGAGCAGCTACGAGGGAAACTACAGCTACGGAAGGTTGGGAAGGGGTTACGAGACAGGTGTGAACAATGACAGGTTCATGAAGCTGCCAAGCCTGGAGAGCCCGAAATCCACGAGCATGGAGAGCCAGCAGAACAACAACAACAACGGAAACACGAATAATGGTGATAATAACAATGAGCAGAATAATAATGGATATCATCCCATTATTCCAGTAGACATGGGGACGGACAATGAAGGGTCATTCGCAACCCACCAGGTGAGTGGTGGTGACCCCAACATGGTTCACCCAATGGAGGCATCATCATCGTTGGTGGTAGGATCAGGTGGTGGAGGCCTCACCAACTGGGCTGCGTTGGATCGTTTGGTTGCCTCTCAGCTCAATGGCCAAACCGAGGCCTCTAGGCACTTCGCATGCTTCAACGACCCCACCATCGCCTACTGCACTACCCACCACGATCTTCCATTGCCCAACCTCCGATCCTCATCAACGCCTTCAACAACCTCCGCCCTCACCAGACCTTCCGCTGCACCAGCATACATCAACCCCTCACACGACTTCACCAGCGAGATTGACCTCTGGAACTTCACCCGCTCCACCTCGGAACCTCTCTGCCACGTCTCCAACACCTCACTCTAG 1293 0.5112 MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTSDTNIVSNVMGDGGQEEGWVVCRIFKKKNNLKTLDSPLGSGEGRRSHLFESCDEGALEQILQQMGRGCKEESSYEGNYSYGRLGRGYETGVNNDRFMKLPSLESPKSTSMESQQNNNNNGNTNNGDNNNEQNNNGYHPIIPVDMGTDNEGSFATHQVSGGDPNMVHPMEASSSLVVGSGGGGLTNWAALDRLVASQLNGQTEASRHFACFNDPTIAYCTTHHDLPLPNLRSSSTPSTTSALTRPSAAPAYINPSHDFTSEIDLWNFTRSTSEPLCHVSNTSL* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00285 430 MobiDBLite consensus disorder prediction 245 288 - -
Lapu10g00285 430 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Lapu10g00285 430 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Lapu10g00285 430 MobiDBLite consensus disorder prediction 250 284 - -
Lapu10g00285 430 FunFam NAC domain-containing protein 24 179 - -
Lapu10g00285 430 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Lapu10g00285 430 SUPERFAMILY NAC domain 9 175 IPR036093 GO:0003677|GO:0006355
Lapu10g00285 430 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00285 Lapu-Chr10 5141248 5143742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00285 1 429 NAC Transcription Factor Family AT2G46770 51.919 7.81e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu10g00285 NAM 4.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00285 - - gmx:100793308 683.715