Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00278 ATGGAGGAACTAATCATCTCTCCTTCCTCATCCTCCTCTTTGGTCTCTCTACCCCAAGAAAACGCTACCCCAACTCCTTCCCTTCAACAAAAGCTCCAATTTCTCCTCCAAAGCCAACCCGATTGGTGGGTCTACGCCATTTTCTGGCAGGCTTCACACGACGACAATGGCAATCTTTACCTGTCCTTCGGAGAAGGTCATTTCCAAGGCACCAAAGAAACTTCCCCAAAATTCCCGACCCCCATTTCCACTAAGAAGTTCAACAAAACCCCCACTGCAGAAAACATCAACGACGCCGAGTGGTTCTACGTCATGTCGTTGACTCGAACGTTTACCATCAACAATGCTTCTTCTTCTTCTTCTTCTTCAACTTCTACCACTCCTTCACTCCTTGGCAAGTCTTTTGCTTTGGGCTCCGCGCTGTGGTTGAACAGCAAGCACGAGCTCCAATTCTACAAGTGCGAGAGATCCAACGAGGCCCACTTGCACGGGATCGAAACGTTGATCTCCATCCCCACGCAAAACGGCGTCGTCGAAATGGGATCCTACGACAGCATCAAACAAAACTGGAACCTCGTCCAACACGTCAAGTCTCTCTTCCAACCCCTTCCAGATCCGCTTCCCATTCAAGTCCTCAATGACCACACCATCTCCTTCGCTGATATCGGCATCGTCGCCGGGATCCATGAAACCAAAAAGCGAAAACAAACCCAGACACCACCCAAGAACAAAAACGACAGCTACGTAGACTCAGAACACTCTGATTCGGATTGTCCTACGTTGCCAACCACCACCACCCCGACAGCCTCAGAGCCCAAGAAACGAGGCAGAAAACCTGTTCTCGGCCGGGACACACCAATGAACCACGTGGAGGCTGAGCGACAACGGAGGGAGAAGCTGAACCACCGCTTTTACGCGCTACGAGCGGTGGTTCCGAATGTTTCGAGGATGGACAAGGCTTCGTTGTTGTCCGATGCTGTCGCTTACATCAACGAGCTCAAAGCGAAGATTGAGTACTTGGAATCGCAGCAACAAAGAGAGGGTAGTAAAAAAGTCAAGGCAGAAATGATGGATACCATGGATAACCAGAGCACCGCCACCACCTCCACCATCGTAGACCAAACCAGGCCTGGTCCTGGAGGCCCAGGCACATTTGGTCTCGAGATCGATGTGAAGATCGTGGGGCCCGATGCCATGGTGAGGGTGCAATCCGAAAATGCGAACCACCCCGGCGCGAGGCTAATGGGTGCATTGAGAGACCTAGAGTTTCAGGTTCATCACGCTAGCATGTCGTGCGTTAACGATCTCATGCTTCAGGACGTGGTAATTAATGTCCCTAATGGAATGAGGAACGAAGAGGGTCTTAAATCTGCGATTCTCATGAGGTTGGATCGGTGA 1398 0.5107 MEELIISPSSSSSLVSLPQENATPTPSLQQKLQFLLQSQPDWWVYAIFWQASHDDNGNLYLSFGEGHFQGTKETSPKFPTPISTKKFNKTPTAENINDAEWFYVMSLTRTFTINNASSSSSSSTSTTPSLLGKSFALGSALWLNSKHELQFYKCERSNEAHLHGIETLISIPTQNGVVEMGSYDSIKQNWNLVQHVKSLFQPLPDPLPIQVLNDHTISFADIGIVAGIHETKKRKQTQTPPKNKNDSYVDSEHSDSDCPTLPTTTTPTASEPKKRGRKPVLGRDTPMNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKAKIEYLESQQQREGSKKVKAEMMDTMDNQSTATTSTIVDQTRPGPGGPGTFGLEIDVKIVGPDAMVRVQSENANHPGARLMGALRDLEFQVHHASMSCVNDLMLQDVVINVPNGMRNEEGLKSAILMRLDR* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00278 465 MobiDBLite consensus disorder prediction 254 270 - -
Lapu10g00278 465 MobiDBLite consensus disorder prediction 231 253 - -
Lapu10g00278 465 MobiDBLite consensus disorder prediction 1 22 - -
Lapu10g00278 465 PANTHER MYC 20 462 IPR045084 GO:0003700|GO:0006355
Lapu10g00278 465 MobiDBLite consensus disorder prediction 271 296 - -
Lapu10g00278 465 SMART finulus 290 339 IPR011598 GO:0046983
Lapu10g00278 465 Gene3D - 282 349 IPR036638 GO:0046983
Lapu10g00278 465 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 284 346 IPR036638 GO:0046983
Lapu10g00278 465 CDD bHLH_AtAIB_like 282 346 - -
Lapu10g00278 465 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 284 333 IPR011598 GO:0046983
Lapu10g00278 465 MobiDBLite consensus disorder prediction 231 296 - -
Lapu10g00278 465 Pfam Helix-loop-helix DNA-binding domain 288 333 IPR011598 GO:0046983
Lapu10g00278 465 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 28 200 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00278 Lapu-Chr10 4996422 4998261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00278 24 463 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 37.445 3.58e-75 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu10g00278 bHLH-MYC_N 5.7e-45 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00278 - K13422 var:108347008 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00278 10 4996422 4998261 Lapu10g00278 10 4996422 4998261 ECH