Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00274 ATGAGTTTTGGATATAAAGCCAGCAATTGGGGACTTCACTCTGACCACCATGATAGGAACTCCAATAAGCAAAAGCCAATTGATACTTGCATATCACAAAACACACAAACACACACACTCTCTCTCTCTCTCTCTCAAAAAATCCCCTATCACCTAACTCACCTATCCTCAACTCAAGGCCCTTTAGTCTCAGCAAGCAAGCAGGAAGTGAGAGTGTTACACAACATGGAATATACCTATTCAGCAGAGGCTGCAGAGGCAGAAACTTACACCAGTAGCTGCACCACCCCATCAAGTGCCATGAGATCAAAGAAGAAAAACAACAACACAAGAAGGTTCAGTGATGATCAAATCAAATCATTGGAAACCATGTTTGAGACAGAGTCAAGGCTTGAGCCTAGAAAGAAGTTGCAGCTGGCAAGAGACCTTGGATTGCAGCCAAGACAGGTTGCTATATGGTTTCAGAACAAGAGAGCTAGGTGGAAGTCAAAGCAACTAGAGAGAGACTACGGTATACTACAATCCAATTACAACAGTTTGGCCTCACGTTTTGAAGCTCTTAAGAAGGAAAAGCAAACATTACTAATTCAGTTGCAGAAGCTAAATCATATAATGCAGAAGCCATTGGAAGCAGGTCAGAGTCGCACACAAGTTGAAGCAGCAAACAGCATGGACAGTGAATCAGAAAATGGAGGCACCATGAAATATGAACATGAGGAAAAGCCAAGCCCATCAATGGAAAGATCAGAACATGCACACGGTGTTCTGTCTGATGATGACGCTAGCATAAAGGTGGAAGACTTTGGCCTAGAAGATGAACATGGTCTCTTGAACTTTGTTGAGCATGCTGATGACTCCTTGACTTCACCGGAAGATTGGAGTGCTTTTGAATCCAATGGTCTCTTAGGCCAAACAACCAGTGATTACCAATGGTGGGACTTCTGGTCCTGA 951 0.4332 MSFGYKASNWGLHSDHHDRNSNKQKPIDTCISQNTQTHTLSLSLSQKIPYHLTHLSSTQGPLVSASKQEVRVLHNMEYTYSAEAAEAETYTSSCTTPSSAMRSKKKNNNTRRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKLNHIMQKPLEAGQSRTQVEAANSMDSESENGGTMKYEHEEKPSPSMERSEHAHGVLSDDDASIKVEDFGLEDEHGLLNFVEHADDSLTSPEDWSAFESNGLLGQTTSDYQWWDFWS* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00274 316 Pfam Homeodomain 111 162 IPR001356 GO:0003677
Lapu10g00274 316 MobiDBLite consensus disorder prediction 89 115 - -
Lapu10g00274 316 Gene3D - 91 173 - -
Lapu10g00274 316 MobiDBLite consensus disorder prediction 231 258 - -
Lapu10g00274 316 MobiDBLite consensus disorder prediction 1 27 - -
Lapu10g00274 316 MobiDBLite consensus disorder prediction 212 230 - -
Lapu10g00274 316 PRINTS Lambda-repressor HTH signature 144 160 IPR000047 GO:0003677
Lapu10g00274 316 PRINTS Lambda-repressor HTH signature 135 144 IPR000047 GO:0003677
Lapu10g00274 316 SUPERFAMILY Homeodomain-like 91 166 IPR009057 -
Lapu10g00274 316 ProSiteProfiles 'Homeobox' domain profile. 104 164 IPR001356 GO:0003677
Lapu10g00274 316 FunFam Homeobox-leucine zipper protein ATHB-7 90 164 - -
Lapu10g00274 316 MobiDBLite consensus disorder prediction 89 104 - -
Lapu10g00274 316 Coils Coil 184 204 - -
Lapu10g00274 316 MobiDBLite consensus disorder prediction 212 258 - -
Lapu10g00274 316 CDD homeodomain 111 165 IPR001356 GO:0003677
Lapu10g00274 316 ProSitePatterns 'Homeobox' domain signature. 139 162 IPR017970 GO:0000981|GO:0006355
Lapu10g00274 316 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 100 247 IPR045224 GO:0003700
Lapu10g00274 316 Pfam Homeobox associated leucine zipper 164 205 IPR003106 GO:0006355|GO:0043565
Lapu10g00274 316 SMART HOX_1 105 168 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00274 Lapu-Chr10 4904400 4905604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00274 97 316 Homeobox Transcription Factor Family AT2G46680 50.000 5.73e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu10g00274 Homeodomain 4.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00274 K09338 - gmx:100797862 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00274 10 4904400 4905604 Lapu10g00274 10 4904400 4905604 ECH