Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00266 ATGATGATGGTTTTAGATATTTTATCTGGTCCTACTGGAACTGCCATTTCTCAAACTCTAGAGACCATTGCTGAGTTCCTAGTTAATGCTAACAATGTTCTTGTGAAAAAGGATAGTTTTAAAGAACTTTGTGCTTACACGGAAAGAATTAAGCCTGTCTTAGAAGAGTTGAGGAAAGGAAAAGTCAGTGACTCTGAGTCATTCAACCAAGCCATTGAGACCATGAATAAAGAAGTTAAAGATGCAAACCTGCTAGCTCTAGAGTGCAGCAAGAAGAGCAAGGTTTATCTACTGATGAACTGCAGGTCCATTGCTAAGAAATTAGAAGATCACACAAAGCGGCTGAGTTGGGCACTTGGTCTTCTTCCTCTAGCCACAACAGGTCTTTCTTCAGGAATAGTTGAAGAAATTGAAAAGCTATGTGACAACATGCAGACATCTGGATTTAAGGCAGCTCTAGATGAAGAGATGATTTTAGAGAAAATTAATTCAGGGATTAGGGAAAACAATGTTGATCGTTCCTATGCAAATAAATTGCTAGCTCTCATTGCTGAGGCTGTTGGGATTAGGAATGAGAGCTCAACAATAAAGTTGGAACTTGAAGAGTTTAAGAGTGAAATTGAAAAAGCACGCGAGAGGAAGGAGTTAGCTGAAGCTATACAAATGGATCAGATCATTGCTTTGCTGGAAAGGGCCGATGTAGCTTCATCACCTAGGGACAAGGAACTCAAATACTTTGCGAAACGCCAATCTTTGGGTAGTCAAATCTTGGAGCCTTTACAGTCATTTTATTGCATCATCACCCAGGATGTTATGGTGGATCCTGTAGAAGTTTCATCAGGACAGACATTTGAGAGAAGTGCCATAGAAAAGTGGTTTGCAGAAGGAAATAAATCATGCCCCTTGACCTCGATTCCCCTAGACACATCAATTCTGAGACCTAATAAAAAGTTGAAACAATCCATACAGGAGTGGAGGGATAGAAATATAATGATTACAATTGCTACATTGAAAGAAAAAATCCTGTCGGGAAATGATGAGGAAGTGTTGCATGATCTGCAAATTCTTCAGAACTTGTGTGAAGAAAAAGACCAACACAGGGAATGGGTTATTATGGAGAGTTACATCCCAACTCTCATCCAAGTTCTATCAAAAAACCGAGATATAAGGAAACATTCTCTTGTCATCCTTGGCATGCTGGCAAGGGATAATGAAGAAGCTAAGGTAAAAATTTCAACAGCTGATCAAGCAATTGAATCAATTGTCCGGTCTCTTGGACGTCGTGCAGAGGAAAGGAAGTTGGCAGTGGCACTACTGCTTGAATTGTCCAAATATGATTTGGCACGAGAACATATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACTATGTCTAGTGGAGATGACAATCAAGCTGCTAGAGATGCAACGGAGCTATTGGAGATCCTTTCATACTCTGATCAGAATGTTATACAGATGGCAAAAGCAAATTATTTCAAGCATTTATTGCAGCGTCTCTACACAGGACCAGAAGACGTAAAGATTCTTATGGCCCGAAATTTAGCAGAAATGGAGTTGACTGACCATAATAGAGAGTCCTTGTTTGATGGTGGTGTATTGGTTCCTCTTCTTCACATGTTCTCACACAATGATATTAAGGTGAAAACAGTTGCTATTAAAGCTCTTAAGAACTTATCCAATTCAAAGAAAAACGGACAGGAAATGATAAGACAGGGGGCTGCACGTCCACTACTTAACCTCCTTTTCAATCAAAACGTATACACTGCAGGTTTGTGGGAAGATCTAGCAACCATAATCGTGCAACTCGCTTCGTCAACTGTATCTCAGGATGCTCAAACACCTGTTTTATTACTAGATTCTGATGATGATGTTTTCAATCTCTTCAGTTTAGTTAGTGTCCCAGAGCCTGTTGTGCAACAGAACATTATCCAGACCTTTTATGCCTTGTGTCAAACGCCCTCAGCTTCGTGTATCAGAACCAAACTGACAGAGTGCTTAGCTGTTCCAAAATTGGTTCAACTGTGTGAGAATGAAAACCAAAACCTACGAGCAAGTGCTGTAAAGTTGTTTTCTTGCTTGGTGGAGAGTTGTGATGAAGCCATCATACAGGAGAACGTGAACCCGAGATGCATCAATACTCTACTCGGGATCATAAAATCTTCATCTGATGAAGAGGAAGTACTTTCTGCCATGGGAATTATATGCTATCTTCCAGAAATTGACCAGATAACCCAATGGCTTCTGGATGCTGGGGCACTTCCAATCATTAAAAGTTATGTCCAAGTTGGGAAAGACAGAGATTATCAAAGGAGTAATTTAGTTGAGAATTCCATCGGTGCCCTAGGTCGTTTTACTGTTTCAAAAAACTTGGATTGGCAAAAAAGTGCAGCTGAAACTGGGATCATAACTGTTTTGGTGCAACTGCTAGAAAATGGAACCACCTTGACAAAACAACGCGTGGCGCAGTCTCTTGCTGAATTTTCTAGAAGCTCATTTAGGCTGAGCAGGCCAATTCCGAAGCGCAAAGGACTCTGGTGCTTCTCAGCTCCTGCTGATATTCGCTGCATGGTTCATGGAGGAATATGCTCAATCAAATCATCATTTTGCCTTTTGGAGGCCAATGCAGTGGGACCACTCACAAGGACTCTTGAGGAATCTGATCCTGGAGTTTGTGAGGCTTCTTTGGATGCTCTATTAACATTGATAGAAGGTGAAAGACTACAGAGTGGTAGTAAAGTGCTTGCAGAAGCAAATGCCATACCACTTATTATTAGATATCTTAGTTCCCACTCCCCTCGCTTGCTGGAGAAGTCTCTAAATGCATTGGAAAGGATCTTTCGGCTAGTTGAATTCAAACAGATGTATGGAGCCTCAGCTCAAATGGCTCTAGTTGATTTGACTCAGAGGGGTAATGGCAGTGTTAGATCCATGTCACTAAGCTTAACCATGTGGAAAAACCTTCTCTTGATGCATCAGTGCATGACATCAACTACTTGCTTGGACAGGAAATGCAACCTTTTTTGTTTCTTCAACAGATATAACTGCTTTCCTCAGTGCAGCAACATGATGTTTCACCTACCAGGAGAACCCCACATGATGTTCCTCATTCTTGTAACCATTTGA 3147 0.409 MMMVLDILSGPTGTAISQTLETIAEFLVNANNVLVKKDSFKELCAYTERIKPVLEELRKGKVSDSESFNQAIETMNKEVKDANLLALECSKKSKVYLLMNCRSIAKKLEDHTKRLSWALGLLPLATTGLSSGIVEEIEKLCDNMQTSGFKAALDEEMILEKINSGIRENNVDRSYANKLLALIAEAVGIRNESSTIKLELEEFKSEIEKARERKELAEAIQMDQIIALLERADVASSPRDKELKYFAKRQSLGSQILEPLQSFYCIITQDVMVDPVEVSSGQTFERSAIEKWFAEGNKSCPLTSIPLDTSILRPNKKLKQSIQEWRDRNIMITIATLKEKILSGNDEEVLHDLQILQNLCEEKDQHREWVIMESYIPTLIQVLSKNRDIRKHSLVILGMLARDNEEAKVKISTADQAIESIVRSLGRRAEERKLAVALLLELSKYDLAREHIGKVQGCILLLVTMSSGDDNQAARDATELLEILSYSDQNVIQMAKANYFKHLLQRLYTGPEDVKILMARNLAEMELTDHNRESLFDGGVLVPLLHMFSHNDIKVKTVAIKALKNLSNSKKNGQEMIRQGAARPLLNLLFNQNVYTAGLWEDLATIIVQLASSTVSQDAQTPVLLLDSDDDVFNLFSLVSVPEPVVQQNIIQTFYALCQTPSASCIRTKLTECLAVPKLVQLCENENQNLRASAVKLFSCLVESCDEAIIQENVNPRCINTLLGIIKSSSDEEEVLSAMGIICYLPEIDQITQWLLDAGALPIIKSYVQVGKDRDYQRSNLVENSIGALGRFTVSKNLDWQKSAAETGIITVLVQLLENGTTLTKQRVAQSLAEFSRSSFRLSRPIPKRKGLWCFSAPADIRCMVHGGICSIKSSFCLLEANAVGPLTRTLEESDPGVCEASLDALLTLIEGERLQSGSKVLAEANAIPLIIRYLSSHSPRLLEKSLNALERIFRLVEFKQMYGASAQMALVDLTQRGNGSVRSMSLSLTMWKNLLLMHQCMTSTTCLDRKCNLFCFFNRYNCFPQCSNMMFHLPGEPHMMFLILVTI* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00266 1048 Coils Coil 193 220 - -
Lapu10g00266 1048 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Lapu10g00266 1048 SUPERFAMILY ARM repeat 333 986 IPR016024 -
Lapu10g00266 1048 CDD RING-Ubox_PUB 263 312 IPR045210 -
Lapu10g00266 1048 SMART arm_5 915 955 IPR000225 GO:0005515
Lapu10g00266 1048 SMART arm_5 528 568 IPR000225 GO:0005515
Lapu10g00266 1048 SMART arm_5 363 402 IPR000225 GO:0005515
Lapu10g00266 1048 SMART arm_5 870 911 IPR000225 GO:0005515
Lapu10g00266 1048 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Lapu10g00266 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 329 IPR013083 -
Lapu10g00266 1048 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 985 - -
Lapu10g00266 1048 Gene3D - 14 126 IPR036537 GO:0007166
Lapu10g00266 1048 Gene3D - 330 429 IPR011989 -
Lapu10g00266 1048 Gene3D - 430 839 IPR011989 -
Lapu10g00266 1048 CDD MLKL_NTD 37 127 - -
Lapu10g00266 1048 Gene3D - 868 1009 IPR011989 -
Lapu10g00266 1048 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 539 581 IPR000225 GO:0005515
Lapu10g00266 1048 Pfam Armadillo-like 443 601 IPR006911 -
Lapu10g00266 1048 Pfam U-box domain 263 328 IPR003613 GO:0004842|GO:0016567
Lapu10g00266 1048 SUPERFAMILY RING/U-box 249 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00266 Lapu-Chr10 4776135 4783108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00266 250 986 U-box Gene Family AT1G76390 29.008 2.06e-59 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00266 - - gmx:100799969 1622.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00266 10 4776135 4783108 Lapu10g00266 10 4776135 4783108 ECH