Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00258 ATGGAGGGGATGGCTCCCAATTCATGTGCAAGGCCAGTTTTAGAGAAGAAAGCAAGACCACAAGAGCAACTGAATTGTCCAAGGTGCAATTCAACCAACACAAAGTTCTGTTATTACAACAACTACAGCCTCACACAACCAAGATACTTCTGTAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTGAGAAACGTTCCAGTTGGAGGTGGTTCAAGAAAGAACAAGAAGGTCACTTCAGCAGCAGGAGCCACAGCTTCATCATCATCATCATCAAAGGTTCCTGACCTAAATCCCCCAAACCTCTCAGTCTCGGCTCTCTCTTCTCAAAACCCTAAAATAATACATGGTGGCCAAGATCTCAACCTGGCTTTCCCAGCTATGGACAAGTATCATCATGGCATGTCCCCTTATGTTGAGATGCAAAACAGTGACACCACCAGTCATCACCAAAACTCTCCTTCTTGTTCTGCTCCTCCAACTTCTCTTTCCGCTCTTGAGCTGCTAAGGTCCAGCATGGCATCTAGGGGTTTGAACCCTTATGTTCCTTCTTCCTTGATGCCAAACTCGGCAAATAACAATGCCCTTTACCCATCAGGGTTTCCCATGCAAGAAGTTAAACCAAGCCTCAGCTTTTCCTCAGTTGATGGGATGGGGAATAGATCATATGATCACCAAGTTCAAGAGAGGGGTGGCAGAGTTTTGTTCCCTTTTGGAGATGTCAATAAGCAGCTTTCTGCTGCAGGATCAGCTGAAGTGGAACACAATAAAGAACAACAACAAGGGAACTCAACTGGATATTGGACTGGAATGATTGGCGAAGGGACATGGTAA 837 0.454 MEGMAPNSCARPVLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVTSAAGATASSSSSSKVPDLNPPNLSVSALSSQNPKIIHGGQDLNLAFPAMDKYHHGMSPYVEMQNSDTTSHHQNSPSCSAPPTSLSALELLRSSMASRGLNPYVPSSLMPNSANNNALYPSGFPMQEVKPSLSFSSVDGMGNRSYDHQVQERGGRVLFPFGDVNKQLSAAGSAEVEHNKEQQQGNSTGYWTGMIGEGTW* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00258 278 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Lapu10g00258 278 MobiDBLite consensus disorder prediction 143 162 - -
Lapu10g00258 278 MobiDBLite consensus disorder prediction 79 103 - -
Lapu10g00258 278 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Lapu10g00258 278 MobiDBLite consensus disorder prediction 254 272 - -
Lapu10g00258 278 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Lapu10g00258 278 MobiDBLite consensus disorder prediction 65 103 - -
Lapu10g00258 278 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 176 IPR045174 GO:0003700|GO:0006355
Lapu10g00258 278 MobiDBLite consensus disorder prediction 250 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00258 Lapu-Chr10 4720138 4722575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00258 16 278 C2C2-Dof Transcription Factor Family AT3G61850 49.474 1.84e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu10g00258 zf-Dof 3.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00258 - - gmx:778110 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00258 10 4720138 4722575 Lapu10g00258 10 4720138 4722575 ECH
Lapu6g01919 6 19035322 19037272 Lapu10g00258 10 4720138 4722575 PCT