Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00257 ATGGGAAGGGCTCCTTGTTGTTCTAAAGTAGGGTTGCACAAAGGTCCATGGACTCCTAAAGAAGATGCATTGCTTACAAAATATATCCAAGCTCATGGAGAAGGCCAATGGAAATCACTACCCAAAAAAGCTGGGCTTCTTAGATGTGGAAAAAGTTGTAGATTGAGATGGATGAACTATCTGAGACCAGATATTAAGAGAGGAAACATAACCCCAGAAGAAGATGATCTCATAATCAGAATGCATTCACTTTTGGGGAATAGATGGTCCCTCATAGCAGGAAGGTTACCAGGAAGAACAGACAATGAAATAAAGAACTACTGGAACACCCATCTATGCAAAAAGCTGAAAACTCAAGGAACAGACGATACTGACACACCCAATACTTTGGAGAGTCCTCAACAAGAACCTGCCAGTGGCAACAAAAAGAAGAAGAACAGTGGGAAAAAGAAGAACAAGCAGAAGAACAAAGGAGGCACAGATAATGCTGAGCCACCAAAGACTCAAGTTTATCTACCAAAACCAATTAGAGTGAAGGCTTTGTATTTACCAAGAACAGATAGTAACACCTTCACCTTTGATTCCAATTCAGCCAGTGCATCAACAAACCAAGAGAAGGAGGAAAGCCCCTCAAAAATAGACTCAAACTTGGCTAGTGAAATTGGAAATGTTGGAGAAAGTGATGATTTTGGCTTCTTCAGTGAGGACCATGACTTGGTCAACGCCTCAGATATTGAATGCCACTCTTATTTTCCCACAGATCATGGCTCGCTACAGCAACTATATGAAGAATATTACCACCTCTTGAACATGGACCATAGCCAATTCGTGGAAATGAATTCATTTGGGGAATCTTTGTTGGTGTGA 867 0.4106 MGRAPCCSKVGLHKGPWTPKEDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLCKKLKTQGTDDTDTPNTLESPQQEPASGNKKKKNSGKKKNKQKNKGGTDNAEPPKTQVYLPKPIRVKALYLPRTDSNTFTFDSNSASASTNQEKEESPSKIDSNLASEIGNVGESDDFGFFSEDHDLVNASDIECHSYFPTDHGSLQQLYEEYYHLLNMDHSQFVEMNSFGESLLV* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00257 288 MobiDBLite consensus disorder prediction 122 141 - -
Lapu10g00257 288 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu10g00257 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lapu10g00257 288 Gene3D - 71 164 - -
Lapu10g00257 288 CDD SANT 16 61 IPR001005 -
Lapu10g00257 288 MobiDBLite consensus disorder prediction 118 171 - -
Lapu10g00257 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lapu10g00257 288 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu10g00257 288 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 217 - -
Lapu10g00257 288 MobiDBLite consensus disorder prediction 192 206 - -
Lapu10g00257 288 Gene3D - 14 66 - -
Lapu10g00257 288 FunFam MYB transcription factor 68 127 - -
Lapu10g00257 288 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lapu10g00257 288 FunFam Myb transcription factor 11 67 - -
Lapu10g00257 288 CDD SANT 71 112 IPR001005 -
Lapu10g00257 288 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu10g00257 288 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lapu10g00257 288 MobiDBLite consensus disorder prediction 192 214 - -
Lapu10g00257 288 SMART sant 66 114 IPR001005 -
Lapu10g00257 288 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00257 Lapu-Chr10 4693940 4695017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00257 4 142 MYB Transcription Factor Family AT3G13540 65.035 4.97e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu10g00257 Myb_DNA-binding 9.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00257 K09422 - gmx:100101857 480.33