Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00251 ATGGACCAACCGCCGCACAACCACAACATCGCCACCACCACCTCCGCCGATAAGCCCGCCACGCCGCGAGGCGGCACGCGTCACCCGCTCTTCCGCGGTGTCCGCAAGCGCCGCTGGGGAAAATGGGTGTCCGAAATCCGGGAGCCGCGCAAGAAGTCGCGCATATGGCTCGGCTCCTTCCCGGCACCGGAGATGGCGGCGAAGGCCTATGATGTCGCCGCCTACTGCCTCAAGGGCCGCAAGGCGCAGCTCAATTTCCCCGACGAGGTCCACCGCCTCCCGCCGCTCCCTTCCGCCTGCACCGCCCGCGACATCCAGGCTGCCGCCGCCAAGGCTGCCCACATGATGATGGTCCAGGTGGCCGCCGCCACAGACTCTCCGGAGAAGAGCAGCATTACCTCCGGCAGCGACCACGCAGCCGATGACTTCTGGCGGGAGATTGAGCTACCGGAGCTCCTCAACGGAAAGTGGTGGACTTCCTCCGGCGACTCCTCGCCGTGGATGGAGACTGACCTCCCGCCGCAGCAACCCTTCACCACGGCGTGCTTGTAG 552 0.6685 MDQPPHNHNIATTTSADKPATPRGGTRHPLFRGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHRLPPLPSACTARDIQAAAAKAAHMMMVQVAAATDSPEKSSITSGSDHAADDFWREIELPELLNGKWWTSSGDSSPWMETDLPPQQPFTTACL* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00251 183 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Lapu10g00251 183 MobiDBLite consensus disorder prediction 1 20 - -
Lapu10g00251 183 FunFam Ethylene-responsive transcription factor 2 29 88 - -
Lapu10g00251 183 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Lapu10g00251 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 152 - -
Lapu10g00251 183 MobiDBLite consensus disorder prediction 1 29 - -
Lapu10g00251 183 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Lapu10g00251 183 PRINTS Ethylene responsive element binding protein signature 69 89 IPR001471 GO:0003700|GO:0006355
Lapu10g00251 183 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Lapu10g00251 183 MobiDBLite consensus disorder prediction 163 183 - -
Lapu10g00251 183 SUPERFAMILY DNA-binding domain 30 89 IPR016177 GO:0003677
Lapu10g00251 183 CDD AP2 29 88 IPR001471 GO:0003700|GO:0006355
Lapu10g00251 183 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00251 Lapu-Chr10 4581488 4583939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00251 1 183 AP2-EREBP Transcription Factor Family AT1G01250 53.333 1.71e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu10g00251 AP2 7.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00251 K09286 - gmx:100802845 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00251 10 4581488 4583939 Lapu10g00251 10 4581488 4583939 ECH
Lapu6g01926 6 19139671 19140410 Lapu10g00251 10 4581488 4583939 PCT