Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00250 ATGAAGATTGAGGTGGGGTTGGGAGGGGTGTGGAATGAGGAAGAGAAAGCGACGGTGGTGGAGGTTCTGGGTCGCGGCGCGTTTGATTACTTGGTGGCGAATTCGGTTTCTAATGAGAATCTGTTAATGGCGTATGGGAGCGGCGAGAATCTGCAGAACAAGCTTTCGGATCTCGTGGAGCGTCCTAACGCTTCGAACTTCAGTTGGAACTACGCGATCTTCTGGCAAATTTCGCAGTCCAAGTTTGGGGATTGGGTTTTGGGGTGGGGAGATGGGTGTTGTAGGGAACCGAGGGAGGGAGAAGAGGGTGGAGAAGTGAGAGGGGTTGCTGCTGATGACGAGAAGGTGCAGCGGATGAGGAAGAGGGTCTTGCAAAAGCTGCACATGACTTTTGGGGGTTCTGATGAGGACAATTATGCCTTTGGGTTGGACCGTGTTACTGACACGGAGATGTTCTTTCTTGCTTCCATGTACTTCTCTTTTCCCCGTGGACTGGGGGGTCCAGGTAAGTGTTTTGCTTCTGGGAAGCATTTGTGGCTCTCGGATGTGTTCAAATCTAGTTTTGATTACTGTGTGAGGTCTTTCTTGGCCAAATCTGCTGGAATTCAGACTGTTGTTTTAGTGCCTACTGATATGGGGGTGGTGGAGATGGGGTCTGTGAGGATGGTGGGTGAGAGTTTTGAGCTTTTGCAGGCTCTGAAATCAGTGTTTTCTGCACAGGCATCATTGGTCCCTCCCAGGGTTAAGCCAATTGCACCATTGGATTTGTTGAGTGAGAAGAGAGATGAGAATGCAAATGCCCTTTTTTCTGGTGTCCCAATTGGGGATAAGGATAAGAATAGCAGCAGTAATGGTAATAACAAAGTAGAAGGAATTGGAGTTCCAAAGATTTTTGGGCAGGATTTGAACAGTGTGACTCAATTCAGGGAGAAACTTGCTGTGAGAAAAATGGAGGAGAGGCCGAGGGCGTGGGGAGGTCATCCTAATGGGAATAGTATTGGCTTTCCGAATGGTGTCCATCATGGTTCTAGTTGGGGGGCCGGTCAAGTTGTGAGGCAGCTTGGTCCTCCTGAAATTCTTGCTCCAAGGTTGGCCAGTGTGCCGGAGCTGGCCAATGGCACAAGGCATGATTTTGTGCATAACAACTTTCAGCAGCAGCGGCCAGTACAGATGCAAATTGATTTCTCAGGAGCCACTTCAAGGGGTCCAGGGAGATCAATCATTGGTGAGTCTGAGATTTCTGATGTTGAGGCCTCCTGCAAGGATGAGAGAGTGAGTGTTGCTGATGACAGAAGGCCGAGGAAGCGGGGAAGGAAGCCGGCTAATGGAAGGGAGGAACCCCTCAATCATGTGGAGGCAGAGAGGCAAAGGCGGGAGAAGCTGAACCAGCGGTTCTATGCACTGCGTGCTGTTGTTCCAAATATCTCCAAGATGGACAAGGCATCACTGTTGGGAGATGCTATTGCTTACATCAATGAACTTCAAGCGAAACTCAAGACCATGGAGTCTGAGAGAGAGAGATTTGGAAGCACCTCTACGGATGGATCAGTGGTGGAGGCCAATGCTGGAGCAGAAAATCATCATAATGAAACTCCTCCTGATGTTGATGTTGAAGCTGCACAAAATGGGGTGGTCGTAAAGGTGAGCTGTCCTATTGATGTTCATCCGGTCTCAAAAGTCATCCAAACCTTCAAAGAGGCTGAAATTGGCGTTGTTGATTCAAAACTTACTGCTGCAAATGATACTGTTTTCCATACATTTGTAGTTAAATCTCAAGGACCTGATCAGTTGACCAAGGAAAAGTTGATTGCATTGTTTTCCAAAGAATCCAATCTCATACAGACATTGTGA 1851 0.4819 MKIEVGLGGVWNEEEKATVVEVLGRGAFDYLVANSVSNENLLMAYGSGENLQNKLSDLVERPNASNFSWNYAIFWQISQSKFGDWVLGWGDGCCREPREGEEGGEVRGVAADDEKVQRMRKRVLQKLHMTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGLGGPGKCFASGKHLWLSDVFKSSFDYCVRSFLAKSAGIQTVVLVPTDMGVVEMGSVRMVGESFELLQALKSVFSAQASLVPPRVKPIAPLDLLSEKRDENANALFSGVPIGDKDKNSSSNGNNKVEGIGVPKIFGQDLNSVTQFREKLAVRKMEERPRAWGGHPNGNSIGFPNGVHHGSSWGAGQVVRQLGPPEILAPRLASVPELANGTRHDFVHNNFQQQRPVQMQIDFSGATSRGPGRSIIGESEISDVEASCKDERVSVADDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKTMESERERFGSTSTDGSVVEANAGAENHHNETPPDVDVEAAQNGVVVKVSCPIDVHPVSKVIQTFKEAEIGVVDSKLTAANDTVFHTFVVKSQGPDQLTKEKLIALFSKESNLIQTL* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00250 616 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 445 494 IPR011598 GO:0046983
Lapu10g00250 616 FunFam Transcription factor bHLH13 438 512 - -
Lapu10g00250 616 CDD bHLH_AtAIB_like 442 514 - -
Lapu10g00250 616 Pfam Helix-loop-helix DNA-binding domain 449 495 IPR011598 GO:0046983
Lapu10g00250 616 Coils Coil 484 511 - -
Lapu10g00250 616 Gene3D - 438 510 IPR036638 GO:0046983
Lapu10g00250 616 MobiDBLite consensus disorder prediction 424 456 - -
Lapu10g00250 616 PANTHER MYC 39 604 IPR045084 GO:0003700|GO:0006355
Lapu10g00250 616 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 237 IPR025610 -
Lapu10g00250 616 SMART finulus 451 500 IPR011598 GO:0046983
Lapu10g00250 616 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 448 508 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00250 Lapu-Chr10 4543717 4547304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00250 10 615 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 52.265 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu10g00250 bHLH-MYC_N 1.6e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00250 - - gmx:100807078 1009.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00250 10 4543717 4547304 Lapu10g00250 10 4543717 4547304 ECH