Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00241 ATGATAGTTAAGCGGACAATGAAAGCCGAAGCACCGAACCTGAAGCGATGCAAGATTGACGGTTCTGATAATGTGATTCAGAAGAAGCGCAGGGTGAACGGGCTGTACTCGCTGGGAGTGCCGGGGGACGCTGAATATTTCAGCAGTGTTTCTGGTTCTTGGAGCAGTGAAGGATCGTATTGGGGTGGCGGTGGTGAGGTTCAGTCCAATTCGAATTCTTTTCTGTTTAATCGGAAAATGGTGAAGGAGGCACGTCGTCCTCCCCTTCTGCGGTCCTCACGTGGACGCGTCCAGAAGCTTCCGTCGAGGTTCAATGACTCCGTTCTTGACGCGGACGACGACTCGAGCTTTGAAGATAACGATAAGAGTTATGTGGAGGACGGAAGGGGTGGCATTGGTGTGAGTGTGGAGAAGAGTGATAGTGTGTGCTGTTCGTCTAGTGTTGGGAGAAGGACTGGTGTTATGGCTGAGAGTAATACGTCTGGGATTAGTTTTGAGGGTGTGGACCAAAAACCCAATGGGGAGAAGAGGAACGAGGTTTACAAGCCGGAGGATTTTTCTTTGGGGGATATAGTTTGGGCTAAGTGTGGGAAGAGGTATCCGGCTTGGCCTGCTGTGGTGATTGATCCTGTCTTGGAGGCTCCAGAGTCCGTACTCAGCTGTTGTATTCCGGGCACGCTTTGCGTGATGTTTTTTGGTTATTCGAAGAATGGAACTCAAAGGGACTATGCGTGGGTGAAGCAGGGAATGGTGTTCCCCTTCTCGGAGTTCTTGGACAGGTTTCAGGGGCAGACCCGATTGTACAAGAGCAAACCTAGTGACTTCCGCATGGCCCTCGAGGAGGCAATGCTGGCAGAAGATGGTGTTCTGGAATCACATTTGGGAAGAGTGGAAGTAACTGATGCAGAAGCTCATCCTGCTCGACTTATGGAGGCTACCTGCTATTATGTTGATGAAGAATACTACGGCCAGGATCAGGTTACAAGGTACTGTGCTGGCTGTGGTTTCGTGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAATTGTGCACCCCGATTTTATTGCAAACATTGTACTAAGCTACGAAAATCAAAACAATACTGTGGCATTTGCAAAAGGATTTGGCATCATTCAGATGGTGGGAATTGGGTGTGTTGTGATGGTTGCAATGTGTGGGTGCATGCTGAGTGTGATAAAATAACCAGCAGACTTTTCAAGGATCTGGAAAATACAGATTACTACTGTCCAGATTGCAAGGGAAAATTCAACAGTAAATTACCAACATCACAAACATACAGGCCAAAAATCACATCAATAGAGAATAGCCAAAAATCTATGATACCCGATAATGTATTGGTGGTGTGCAATGGCATGGAAGGAATATATATCCCAAAACTTCATCTAGTCATGTGCAATTGTGGTTCTTGTGGTTCTAGGAAGCAGACACTTAGTGAATGGGAAAAACATACAGGTTGCAGAGCAAAAAAATGGAAACATAGTGTGAAAGTGAAAAGTACAATGCTACCTCTAGAAAAATGGATGGCTGAACACATCCCACTAGAGGGAATATCCCAGCAGTTAGATCAGCAGCAGGTACTTGCCTTTTTGCAAGAGAAGTATGAGCCTGTTAATGCAAAATGGACAACAGAAAGATGTGCTGTTTGCAGATGGGTTGAAGATTGGGAAGATAACAAAATTATTATTTGTAACAGATGCCAAATAGCAGTCCACCAAGAGTGCTATGGGGCAAAAAATGTTCAGGATTTAACTTCTTGGGTTTGCAGAGTATGTGAAACTCCTGATGTTGAGAGGGAGTGCTGCCTCTGCCCAGTAAAAGGTGGTGCTCTAAAGCCAACTGATGTTGAAATGTTGTGGGTTCATGTAACATGTGCTTGGTTTCGACCTCAAGTTGTTTTCCAAAACCATGAGGCCATGGAACCTGCTGTGGGTATCCTTAAAATTCCTCCTAATTCGTTTGTGAAGACTTGTGTGATTTGTAAACAGAGCCATGGTTCCTGTATAACTTGTTGCAAGTGTGCTACATATTTTCATGTGATGTGTGCATCAAGGGCAGGGTATACAATGGAATTGCATTCCATGGAGAAGAATGGGACTCAAATAACCAAGAAGCTAATATATTGTGCAGTTCACAGGGTCCCAAATCCAGATTCGGTACTAGTCGTACACACACCCCTGGGGATTTTCTCTCCCAGAACTTCGCTTCAAAATCAGAAGGGATGCTTCAGGGGATCGAGGCTAATTTCATCAAAGAATCTAGAGCTTATTGAATCTTCAACCACTGAAAATGATGTAGTTGAGCCACTGTCTGCTGCTAGATGTCGTGTCTACCGTAGGTCTCCTAATAAGAGGGCCAATGAGCCAATAATTCACTGGCCTAGGGGACCCAGCCGACATTCTCTAGATGCAATAACTCTGTTGAACGACTTTAAGGATGGTGACGAATCTAAAGTATTCACTTCTTTCAAGGAACGTCTTCGCCATTTACGGGAAATGGAAAAATTGCGAGTTTGCTTTGGAAAATCCGGCATTCATGGATGGGGCCTCTTTGCTCGTAGAGATATACAAGAAGGAGAGATGGTTGTTGAGTATCGGGGTGTGCATGTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCAAAATATCGTTCGGAAGGCAAAGATTGCTATCTGTTCAAGATTAGCGAGGAAGTGGTAGTTGATGCAACGAACACGGGCAATATTGCACGCTTAATAAATCATTCTTGCATGCCAAACTGCTACGCAAGGATAATGAGTCTGGGTGATCAGGAGAGCCGGATTGTTCTTATTGCCAAGACTAATGTTTCTGCTGGTGAAGAACTAACGTATGACTACTTGTTCGATCCAGATGAGCGGGATGAACTGAAAGTTCCCTGCCTTTGCAAAGCCCCCAATTGTAGGAGATTTATGAATTAG 2958 0.449 MIVKRTMKAEAPNLKRCKIDGSDNVIQKKRRVNGLYSLGVPGDAEYFSSVSGSWSSEGSYWGGGGEVQSNSNSFLFNRKMVKEARRPPLLRSSRGRVQKLPSRFNDSVLDADDDSSFEDNDKSYVEDGRGGIGVSVEKSDSVCCSSSVGRRTGVMAESNTSGISFEGVDQKPNGEKRNEVYKPEDFSLGDIVWAKCGKRYPAWPAVVIDPVLEAPESVLSCCIPGTLCVMFFGYSKNGTQRDYAWVKQGMVFPFSEFLDRFQGQTRLYKSKPSDFRMALEEAMLAEDGVLESHLGRVEVTDAEAHPARLMEATCYYVDEEYYGQDQVTRYCAGCGFVLPCKTMKKIKDSNCAPRFYCKHCTKLRKSKQYCGICKRIWHHSDGGNWVCCDGCNVWVHAECDKITSRLFKDLENTDYYCPDCKGKFNSKLPTSQTYRPKITSIENSQKSMIPDNVLVVCNGMEGIYIPKLHLVMCNCGSCGSRKQTLSEWEKHTGCRAKKWKHSVKVKSTMLPLEKWMAEHIPLEGISQQLDQQQVLAFLQEKYEPVNAKWTTERCAVCRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQDLTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPQVVFQNHEAMEPAVGILKIPPNSFVKTCVICKQSHGSCITCCKCATYFHVMCASRAGYTMELHSMEKNGTQITKKLIYCAVHRVPNPDSVLVVHTPLGIFSPRTSLQNQKGCFRGSRLISSKNLELIESSTTENDVVEPLSAARCRVYRRSPNKRANEPIIHWPRGPSRHSLDAITLLNDFKDGDESKVFTSFKERLRHLREMEKLRVCFGKSGIHGWGLFARRDIQEGEMVVEYRGVHVRRSVADLREAKYRSEGKDCYLFKISEEVVVDATNTGNIARLINHSCMPNCYARIMSLGDQESRIVLIAKTNVSAGEELTYDYLFDPDERDELKVPCLCKAPNCRRFMN* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00241 985 CDD PHD_ATX3_4_5_like 553 599 IPR042011 -
Lapu10g00241 985 Gene3D - 445 530 IPR010919 -
Lapu10g00241 985 SMART PostSET_3 969 985 IPR003616 -
Lapu10g00241 985 FunFam Histone-lysine N-methyltransferase 603 722 - -
Lapu10g00241 985 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 363 427 IPR013083 -
Lapu10g00241 985 SMART PHD_3 369 421 IPR001965 -
Lapu10g00241 985 SMART PHD_3 553 600 IPR001965 -
Lapu10g00241 985 SMART PHD_3 664 720 IPR001965 -
Lapu10g00241 985 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 548 602 IPR013083 -
Lapu10g00241 985 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 603 721 IPR013083 -
Lapu10g00241 985 Pfam PHD-zinc-finger like domain 607 719 - -
Lapu10g00241 985 CDD PWWP_AtATX3-like 189 288 - -
Lapu10g00241 985 ProSiteProfiles Post-SET domain profile. 969 985 IPR003616 -
Lapu10g00241 985 SMART PWWP_4 186 255 IPR000313 -
Lapu10g00241 985 ProSitePatterns Zinc finger PHD-type signature. 554 599 IPR019786 -
Lapu10g00241 985 ProSiteProfiles Zinc finger PHD-type profile. 551 602 IPR019787 -
Lapu10g00241 985 FunFam Histone-lysine N-methyltransferase 818 985 - -
Lapu10g00241 985 Pfam PHD-finger 566 600 - -
Lapu10g00241 985 Pfam SET domain 854 959 IPR001214 GO:0005515
Lapu10g00241 985 CDD SET_SETD1-like 832 981 - -
Lapu10g00241 985 SUPERFAMILY FYVE/PHD zinc finger 552 616 IPR011011 -
Lapu10g00241 985 PANTHER PHD FINGER PROTEINS 82 962 - -
Lapu10g00241 985 SMART set_7 843 966 IPR001214 GO:0005515
Lapu10g00241 985 ProSiteProfiles Extended PHD (ePHD) domain profile. 605 720 IPR034732 -
Lapu10g00241 985 SUPERFAMILY Tudor/PWWP/MBT 178 301 - -
Lapu10g00241 985 Pfam PHD-finger 369 422 IPR019787 -
Lapu10g00241 985 CDD PHD_TCF19_like 370 420 - -
Lapu10g00241 985 Gene3D SET domain 821 985 IPR046341 -
Lapu10g00241 985 SUPERFAMILY FYVE/PHD zinc finger 367 427 IPR011011 -
Lapu10g00241 985 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 985 IPR025780 -
Lapu10g00241 985 ProSiteProfiles SET domain profile. 843 960 IPR001214 GO:0005515
Lapu10g00241 985 ProSiteProfiles Zinc finger PHD-type profile. 367 423 IPR019787 -
Lapu10g00241 985 Pfam PWWP domain 189 285 IPR000313 -
Lapu10g00241 985 SUPERFAMILY SET domain 838 981 IPR046341 -
Lapu10g00241 985 Gene3D - 176 292 - -
Lapu10g00241 985 ProSiteProfiles PWWP domain profile. 188 257 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00241 Lapu-Chr10 4424948 4433183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00241 554 706 C2H2 Transcription Factor Family AT3G14740 33.750 1.95e-20 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu10g00241 zf-HC5HC2H_2 7.3e-29 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00241 - - gmx:100797346 1828.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00241 10 4424948 4433183 Lapu10g00241 10 4424948 4433183 ECH