Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00240 ATGCTGGCAGCCACAAACCGATGGTTCCAGCGTGTTATTATGGAGGACGGTATATGGAAGTTCGTGTGCCTGCGTGATCTTCAGGTCCCACCCCCAGAACGCGTGGCATTCAGGTGGTGCAAGCTGTACACGTCAGCATTTGATGGAAGCCACTCCTACTTGTTCCGTCAAAAAGAGAAACACATTGATTGGATGCGTATTGGCGCCTTTTCTTTTGATTCCTCTGTAGCCGTCCTGGCTGAGAGACTGAGTCTTCCGGGGAAGACACGGAAAGGAGAAAGCATTGAAAAGTTGTTGCGGTCTCAAGGTTGTTGCGTGCTAGACAATGTTAAATCTGGAATCTGGATAGCTGACCTACAGCTAGTAAGATGCCCGGTTTGTGACCTCAACACGTGCGACGGAACAATGCAGACATTAGATGCAAGGCACATAGAACTATTCCTCTGTGAAGGCTACCGAAATGGGAGCTGGGATTACCAGCTTGTAGGATCTCATGATATAAAAAAACGAGCAGATGGGGCTGCTGGCTCCATTTTCGACATTAAACACCTGGGGGATTCTTCAACGTCGGCGGTATTTGATTACAAATCATGGATTGGAAGAACAAATGACTGGCAACCCAAGGCCATGATTGCTTTCCATGCCGTAGCCGTGAATACTAATTTACAAGAAAATGAAGGTCTTCATGTGAAATACCATGCTATGAGGGCAGGGACTGACGGAGAAGTTGTTTCTATCAGAATCTCTCAACAGCTCCTCAATAGTATCATTATTCGTTTCCCCTTTCAACTAGAAGGTGAGCAAAATCCTTATTGTGGCTATCCAGGTTTCAACTTAATTTGCACCAATAATAGCAAAACAGTGCTAAAACTTCCTTACTCTGGGGTATTCTACGTGCGCAACATTAATTACCTCACACAAAGGATACAAGTCTACGACCCTGATGATTGCCTCCCCAGACGTCTTCTGAAGCTCAATGTCTCAGGCTCTCCTTTTATTCACACTTTTACTCGTAGCTACACCTTCTTAAGCTGCCCATTTCAGAACGCAGGATCACAATTTGTTCCCATTGACTGCCTTAGTAATTCCACACGTTTTGTATCAGCTGTCCCTTCACTAAATTTGCCCAATCCATTACCTGCGTCTTGCTATGTCATTACCAGTCTTTCTGTCCCAGTTGCAGGGCCAGAGCAGCAGTATGAGAGTAATTTCAAAGGTGCATCACGTCAAGGAATCCAAATTTTCAGAATCATCACATTGTGCATCGCTGGACCAGCAGCAATCTTTGCAATTGTGATGGCATGTTGTGTGTGCTACAAGGACCGACTAACCAACATTCGTAACAATGCTATTGCGAGGTCTGCACCAGCCACAATATTACCAGCACCACAGATTGTGACCACGGGTTTGGACGAGTCCACCATTGAGTCCTATGAGAAGGTAGTGCTTGGTGAGAGTAAACGAGTCCCTGGACCCAACGATGGTTGCTGTTGGATATGCTTATCAGAGTACAATAGCAAAGAGACAATACGATGTATTCCTGAATGCGAGCACTGCTTCCATGCAGATTGCATAGACGAGTGGCTTCGCATCAATGCAATATGCCCAGTTTGTCGTAACTCTCCCTCTCCTTCTCCTCTTAATGTTACGTCCATTAACCCCTAA 1665 0.4565 MLAATNRWFQRVIMEDGIWKFVCLRDLQVPPPERVAFRWCKLYTSAFDGSHSYLFRQKEKHIDWMRIGAFSFDSSVAVLAERLSLPGKTRKGESIEKLLRSQGCCVLDNVKSGIWIADLQLVRCPVCDLNTCDGTMQTLDARHIELFLCEGYRNGSWDYQLVGSHDIKKRADGAAGSIFDIKHLGDSSTSAVFDYKSWIGRTNDWQPKAMIAFHAVAVNTNLQENEGLHVKYHAMRAGTDGEVVSIRISQQLLNSIIIRFPFQLEGEQNPYCGYPGFNLICTNNSKTVLKLPYSGVFYVRNINYLTQRIQVYDPDDCLPRRLLKLNVSGSPFIHTFTRSYTFLSCPFQNAGSQFVPIDCLSNSTRFVSAVPSLNLPNPLPASCYVITSLSVPVAGPEQQYESNFKGASRQGIQIFRIITLCIAGPAAIFAIVMACCVCYKDRLTNIRNNAIARSAPATILPAPQIVTTGLDESTIESYEKVVLGESKRVPGPNDGCCWICLSEYNSKETIRCIPECEHCFHADCIDEWLRINAICPVCRNSPSPSPLNVTSINP* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00240 554 CDD RING-H2_EL5-like 496 539 - -
Lapu10g00240 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 462 544 IPR013083 -
Lapu10g00240 554 SUPERFAMILY RING/U-box 490 542 - -
Lapu10g00240 554 Pfam Ring finger domain 497 539 IPR001841 -
Lapu10g00240 554 PANTHER F-BOX PROTEIN RMF 1 253 - -
Lapu10g00240 554 Pfam Wall-associated receptor kinase galacturonan-binding 256 313 IPR025287 GO:0030247
Lapu10g00240 554 ProSiteProfiles Zinc finger RING-type profile. 497 539 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00240 Lapu-Chr10 4415728 4422778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00240 254 545 C3H Transcription Factor Family AT2G46495 46.154 9.02e-78 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00240 - - gmx:100798415 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00240 10 4415728 4422778 Lapu10g00240 10 4415728 4422778 ECH