Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00235 ATGGGATACTTATCACAGCCATCAGAACACTCAACCATGAAACCAATCTCTCTAGCAAAGATGGATGACAATGGAGAATTATGTTCTTATGCTTCCTGGCTAGGAAAGCATCCTTCTGTCCTGGACAATTTCGATGAAGTGATGAGCGTTGCTGAAGGGAAAGAGATTGTTGTGTTTTTGGACTATGATGGAACACTGTCACCGATTGTAGATGACCCTGATAAGGCTTACATGAGTGATGCTATGCGAGCAGCTGTACGTGAAGTTGCTTATTGTTTTCCCACTGCCATTGTTAGTGGAAGGCGTAAGGATAAGGTGTATGAATTTGTGAAGCTAAGGAATGTTTACTATGCTGGAAGTCATGGTATGGATATATCAACTCCATCAGGGTCTTCAAAATGTGAAGATCAGAAGCATCAGACAAAGGCTGTTGATGAAAAGGGTAATCATGTTGTTCACTTTCATCCTGCAAAAGAATTTTTGCCAACCATTCAAGAGATAATTAAGGTTTTGAAAGAAAGTACATCAAGAATAAAGGGCTCTATGATTGAGGATAACATGTTCTGTGTCACTGTACACTACCGGTGTGTGAAAAATGAAGAGGATGTTAGTGTTCTGAGAGAATTGGTGGAGTCCATAATGAAGCCTTACACCAGTTTCCACGTATCAAGTGGCAGAAAGGTTATGGAGATACGTCCAAAAGTAAACTGGGACAAAGGACATGCTCTTACGTATTTGCTTGACACTTTTGGCTTTGACAACTTCAACAATGTTCTTCCAATGTACCTTGGGGATGATAGAACAGATGAAGATGCTTTTAAGGTTATAAGAGACATTGGACGAGGTTTTCCCATTGTTGTTTCTTCAATTGCAAAGGAGACTGAGGCTTCATATTCCCTGCGTGACCCTTCTGATGTGCTGGCTTTCTTGATTCGTTTAGCAAAATGGAAGAAGAACCTGTTACACAAAACTAAATTA 978 0.4018 MGYLSQPSEHSTMKPISLAKMDDNGELCSYASWLGKHPSVLDNFDEVMSVAEGKEIVVFLDYDGTLSPIVDDPDKAYMSDAMRAAVREVAYCFPTAIVSGRRKDKVYEFVKLRNVYYAGSHGMDISTPSGSSKCEDQKHQTKAVDEKGNHVVHFHPAKEFLPTIQEIIKVLKESTSRIKGSMIEDNMFCVTVHYRCVKNEEDVSVLRELVESIMKPYTSFHVSSGRKVMEIRPKVNWDKGHALTYLLDTFGFDNFNNVLPMYLGDDRTDEDAFKVIRDIGRGFPIVVSSIAKETEASYSLRDPSDVLAFLIRLAKWKKNLLHKTKL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00235 326 CDD HAD_TPP 57 308 - -
Lapu10g00235 326 NCBIfam HAD-IIB family hydrolase 58 280 IPR006379 -
Lapu10g00235 326 FunFam Trehalose 6-phosphate phosphatase 157 234 - -
Lapu10g00235 326 FunFam - 56 108 - -
Lapu10g00235 326 SUPERFAMILY HAD-like 57 319 IPR036412 -
Lapu10g00235 326 Gene3D - 138 234 - -
Lapu10g00235 326 Pfam Trehalose-phosphatase 59 304 IPR003337 GO:0003824|GO:0005992
Lapu10g00235 326 NCBIfam trehalose-phosphatase 54 314 IPR003337 GO:0003824|GO:0005992
Lapu10g00235 326 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 22 319 IPR044651 GO:0004805|GO:0005992
Lapu10g00235 326 FunFam Trehalose 6-phosphate phosphatase 163 323 - -
Lapu10g00235 326 Gene3D - 58 300 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00235 Lapu-Chr10 4348129 4354381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00235 58 314 Trehalose Biosynthesis Gene Families AT1G23870 26.007 1.62e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00235 K01087 - gmx:100799466 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00235 10 4348129 4354381 Lapu10g00235 10 4348129 4354381 ECH