Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00234 ATGCATACAAAGCTGTTAACCCAGTTTCGTCTTCTCCATCCCCTTCTTCCCATGAAGCCTCGCACACTTCCTCCTCTCTCTCGCGCCTTCTTCTTCCATCCATCCAAGTTCCTCAGAAGCGCACCGTTTAAAGCTCGCGCCTTTTCTGACCGGGCCCGCGACAAGCTTCCGGTTCGCCCCTCCAAGAGCCTCGTCGACGACGAGGCTGACCTCAGCGACTGGGTCGATGGGTTGCGGACCGGCCGGGCCGACCGCATCACCCAGCGGTTCGACAGCGACGACGACGAAGGCCGCGAATTTCGGCCGCCACGGAGGAGCAACGATAGGGCTTCCACCAATTTGGGGAAGAGGAGGGGCGAGGATTTGCGGAGGGGAAGGCAAAATGCGAGTGCGAAGAGAAAGTTTCAACCGAGGAGTGACGAAGATGAGGAAGTTGTGGAGAGAGGAAGGAAGTTCAAGGGTAGTGGCTTTGAAGCGTTTCTCAGCGAAGATGAGAGTGAAGAGGAAGATAGTGATGGGAGTGAGGAGGAGGAGATATTGAACAAGAGTAGAACCGCTTTGTTTGGTCAACAAAACGGTTTGAACCGGAAAGCTACTGAACCGGCTCCTAGACCATCATCACCTGGAGGTTCTGATTCTTATCTGAGTGAATCAAGATTTGACCAATGTTCAGTCTCCCCACTGTCACTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACGGTTGTGCAGGAAGCTACTCTTCCAGTAATTCTCAAAGGTAAGGATGTCCTTGCCAAGGCCAGGACAGGCACAGGAAAAACAGTAGCATTTTTGCTTCCATCAATTGAAGTTGTGGTGAAGTCACCTCCAAGTGATCGTGATCATAGGCGGCCACCAATTTTTGTTCTTGTCATATGCCCAACTCGAGAGCTTGCAAGTCAGGCTGCTGCAGAGGCCAATAAACTGCTGAAATATCATCCTACCATTGGTGTTCAAGTTGTGATTGGAGGCACAAGACTTGCTTTAGAACAGAAACGAATGCAGGCAAACCCTTGCCAGATCCTTGTTGCTACCCCTGGAAGGCTTAGAGATCATATTGAGAATACTGCTGGTTTTGCATCTAGGCTGATGGGTGTGAAGGTTTTGGTGCTTGATGAAGCTGATCATTTACTTGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCAGTCCCTAAACAACGACAAACACTTATGTTTTCTGCCACAGTTCCAGAAGAGGTGCGTCAAGTTTGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTTCAAGAGGGTACTGAGGAGACACATTCACAGGTACGCCAGATGCATTTAGTTGCCCCATTGGACAAGCATTTCCCTCTACTATATGCTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCTGAGCTTCTTGGTGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGGAAGTCAAAGAGTCTCATCCTGGTTACTTCAGATGTATCTGCACGTGGAGTTGATTATCCAGATGTCACTCTTGTTATACAGGTTGGTTTGCCAGCAGATAGAGAACAGTATATACATCGCTTGGGTAGAACGGGGCGAAGAGGAAAAGAAGGGCAGGGCATACTGCTGCTGGCTCCTTGGGAAGAGTTCTTTTTATCCAGCGTAAAAGATTTGCCTATAGAGAAAGCTCCCGTGGTACCTTCAGTTGATCCTGATACCAAGAAAAAGGTAGAAAAAGCTCTATCCCATGTGGAGATGAAGAACAAAGAAGCAGCATATCAGGCATGGCTTGGCTACTACAATTCGAACAAGAAAGTGGGGCGTGACAAGTATAGGCTAGTGGAGCTTGCAAATGAGTTTAGTCGAAGCATGGGGCTTGATAACCCTCCAGCTATTGCTAAGCTAGTCCTTGGCAAGATGGGCCTCAGGAATATCCCTGGTTTACGTGCCAAATAA 2064 0.4763 MHTKLLTQFRLLHPLLPMKPRTLPPLSRAFFFHPSKFLRSAPFKARAFSDRARDKLPVRPSKSLVDDEADLSDWVDGLRTGRADRITQRFDSDDDEGREFRPPRRSNDRASTNLGKRRGEDLRRGRQNASAKRKFQPRSDEDEEVVERGRKFKGSGFEAFLSEDESEEEDSDGSEEEEILNKSRTALFGQQNGLNRKATEPAPRPSSPGGSDSYLSESRFDQCSVSPLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKARTGTGKTVAFLLPSIEVVVKSPPSDRDHRRPPIFVLVICPTRELASQAAAEANKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFASRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVQEGTEETHSQVRQMHLVAPLDKHFPLLYALLKDHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKSLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSSVKDLPIEKAPVVPSVDPDTKKKVEKALSHVEMKNKEAAYQAWLGYYNSNKKVGRDKYRLVELANEFSRSMGLDNPPAIAKLVLGKMGLRNIPGLRAK* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00234 687 PANTHER RNA HELICASE 172 617 - -
Lapu10g00234 687 Gene3D - 441 669 IPR027417 -
Lapu10g00234 687 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 466 614 IPR001650 -
Lapu10g00234 687 Gene3D - 195 434 IPR027417 -
Lapu10g00234 687 Pfam DEAD/DEAH box helicase 243 420 IPR011545 GO:0003676|GO:0005524
Lapu10g00234 687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 587 IPR027417 -
Lapu10g00234 687 SMART ultradead3 237 450 IPR014001 -
Lapu10g00234 687 MobiDBLite consensus disorder prediction 86 218 - -
Lapu10g00234 687 SMART helicmild6 490 571 IPR001650 -
Lapu10g00234 687 Pfam Helicase conserved C-terminal domain 463 571 IPR001650 -
Lapu10g00234 687 CDD DEADc_MSS116 225 434 - -
Lapu10g00234 687 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 249 432 IPR014001 -
Lapu10g00234 687 CDD SF2_C_DEAD 447 580 - -
Lapu10g00234 687 MobiDBLite consensus disorder prediction 86 160 - -
Lapu10g00234 687 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 218 246 IPR014014 GO:0003724
Lapu10g00234 687 MobiDBLite consensus disorder prediction 161 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00234 Lapu-Chr10 4339729 4345783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00234 218 602 Eukaryotic Initiation Factors Gene Family AT3G19760 28.967 2.35e-47 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00234 - - gmx:100795739 1144.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00234 10 4339729 4345783 Lapu10g00234 10 4339729 4345783 ECH