Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00227 ATGGAAGAGAGTATGAAGTGTGAACAAGTTGGTGTCATTGATGAGTTAATGCTAGGGAAGGAGCTAACAAAGAAGCTTTGTGACCAACTATTCTCATCATCATCAACATCTTCGTCACCTTCATCTGGTGACACAAATGAAGTCTTAATTGAGAAAATAATTTCCACCATGGAGAAGGCACTTGCCATGGTGAATTGTATGGCTAATGTAGGAGAAAGTAAGGCCAAGAATGACAGCATGATGGATTCCCATGGCTCCTTCACAAATGGTAGCCCTAAAAGAGAGGTCACGGAGCCTGAGGTTGAGCACAAAGATGTCTCTAAGAGAAGAAAGACCATGCCAAGGCGAAGAGATCAAGTGAAGGTGTGCTTGGAAACATCAGAAGGAACTCGGGAAGATGGCTATAGCTGGAGAAAATATGGACAGAAGGATATTCTTGGAGCCAAGTTTCCAAGGGGATATTACAGATGCACATACAGAAACATACAAGGATGTCTGGCCACTAAGCAAGTGCAAAAGTCAGATGAAGATCCAATGATATGCGAGATAACATACATTGGAAGACACACATGCACGCAAGCAAGTCACTTGAACAAGGCAGTGGTACCACCATCAGAAACCAAGATGGGAATGGAAGAAAACAAGCACCAAACCCATCAAAAGAATCAACCACAACAAGAGAAAATAGAGCAACCCCCAGAGACAATTTTCACCTTTGGATCACAAGGTGTTGAAGTTAAAGTAGAGGACTTGGACCACAAGCAGGACATATTCCCATCATTTTTCTTCTCTTCTCCATCAATAGGGTCTGAAAGTGAGGACAACGACAAAATATTCCCTTACACCATGATTGAGAACAACTTAATGGAAAGCTTCTCTCCTGCATTCATATCTCCAACAACTTCAGAATCAGAAATGTTCGGCTGGGGGAGCGCTGGACTTGGTCAAAGTGTGCATAGTTCCTCGTCTGATATCACTGATATAGTTTCAAAACCAACTTCAGTCACCAATTCGCCAATAATGGACCTCGATTTCTTCCTTGATAACTTCGATTTCGACATAGATTTCCCTGTGAACACCACAGAACTTTGCACCTGA 1098 0.4244 MEESMKCEQVGVIDELMLGKELTKKLCDQLFSSSSTSSSPSSGDTNEVLIEKIISTMEKALAMVNCMANVGESKAKNDSMMDSHGSFTNGSPKREVTEPEVEHKDVSKRRKTMPRRRDQVKVCLETSEGTREDGYSWRKYGQKDILGAKFPRGYYRCTYRNIQGCLATKQVQKSDEDPMICEITYIGRHTCTQASHLNKAVVPPSETKMGMEENKHQTHQKNQPQQEKIEQPPETIFTFGSQGVEVKVEDLDHKQDIFPSFFFSSPSIGSESEDNDKIFPYTMIENNLMESFSPAFISPTTSESEMFGWGSAGLGQSVHSSSSDITDIVSKPTSVTNSPIMDLDFFLDNFDFDIDFPVNTTELCT* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00227 365 Gene3D WRKY domain 116 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu10g00227 365 FunFam WRKY transcription factor 53 118 194 - -
Lapu10g00227 365 ProSiteProfiles WRKY domain profile. 126 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu10g00227 365 SMART WRKY_cls 131 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu10g00227 365 SUPERFAMILY WRKY DNA-binding domain 128 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu10g00227 365 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 12 335 IPR044810 GO:0003700
Lapu10g00227 365 MobiDBLite consensus disorder prediction 75 118 - -
Lapu10g00227 365 Pfam WRKY DNA -binding domain 132 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00227 Lapu-Chr10 4245165 4247833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00227 5 356 WRKY Transcription Factor Family AT2G46400 31.180 2.93e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu10g00227 WRKY 1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00227 - - gmx:100170747 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00227 10 4245165 4247833 Lapu10g00227 10 4245165 4247833 ECH
Lapu6g01948 6 19342299 19345116 Lapu10g00227 10 4245165 4247833 PCT