Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00220 ATGGGCAAGGCTATAATCTCAAACAATGCGCATCTTATTAGCAGTATAACTCAGAGTACTTCATCTTCGTATAATTATCCTCAATTCATTGTAAAGCAAACAAGGAAGGGAAAGGGGGTTATTTGTGAAGATTTAGACAAAAGCTTCGGCATTGTAGGAGCAATTAAGAGCCAGGAGGATGAGAAACCTTTTGCACCAAAGTTTCAATATGATACACTGAGGAGATCAAGTGTTGATGATGATAATAAGCCTTTAGTGGAAGGAACTGTAGTGTCTGGTAGCAATGGAATTAACTTAAGAGAGTGGCTGAAGTCTGAATGTCATAACATGATGAAATTAAAAAGGCTTCATATATTTAAACAGGTACTGGAATCAGTTGATTTTGCTCACTCCCAAGGACTTGTCTTGCTAGACTTTCAACCATCTTGTTTCACTTTATTGCCTTCAAGTAAGATTAAGTACATTGGTTCATATGGCCGACAACAGTTAGGTAATGAAGTCATGACCTGCAATGTGACTAGGAAAAGGCCTCTGGAATTGAATACCTGTGCTTGCCTAAGTTTGAGTACAAAGCAGCAAAAACTGTTTGAGGAGACAGGATCCTTTAGACAGTCCCAGCAATGCTCCTTTACTCATGGCTGCAGGACAACAGTGAATCAAACTGACTCTGGCACAATCAGACCTTTGGAATCAAGGAGTAAAGAAAGTATGTGCCAAACTATTTCTAATTGTCAACATACTTTTTCCAAAGAAAGTCAGTTTGTGTCTGCTACTGTTCAGTTAGAAGAGAGGTGGTATTGCAGTCCGGAAATGCTGAATTATGGAGTCTGCACGTTGTCATCTAATATTTATAGCCTTGGAGTTCTTCTTTTTGAAATGCTTTGCAATATTGAGTCAAGGGAGGTGCATTCAACTGCCATGTTGGAGTTGTGTCATAGAATCCTACCGCCTAAATTTCTAGCAGAAAATCCAAAGGAAGCTGGCTTTTGTCTTTGGCTTCTTCATCCTGAACCGTCATCTCGTCCTAATGCTAGGATAATTTTAGAATCTGAATTTATACGCGAATCAGAGGAATCAAGTTCGATAGATGATGTTGGAATATCTGATGATGAGGCTGAAACAGATAAATTACTACATTTTCTAACTACACTCAGAGAAGAAAAGATAAAACAGGCAGCCAAGTTGGAAGAACAGCTAAATTTGTTGAATGAAGATATTCAGGAGGTAGAAAGAAGTTATTCATTTGGGACAGATTCAATATTTCCTTTGACACAAGTGAATAATTCTGAAGTGAGAGAGAATAATTTACATTTTCAAGATTCTTCTAGTTCAGACATTAGTAGATCCATTCGAAGGTCATTTGGTGATGAAGAAAGATTTATGGGTAACATAAGTCAGCTGGAGAATTCTTACTTCTCTACAAGAACCCGAGTCCTGTCAAAAAATACTTCATCTATTTCAAGCAATGATAAAAATCTGATGGAAAATAGATGGACATTGCCTCAAGGAGAGCATGCTAACAAGGAGCCTAGAAAAATTCATACTTCTGTTGGTTGTCTAGGATCCTTCTTTGAAGGTTTATGCAAGTTCGCTTGTTACAGCAAGTTTGAAGAGCGTGGCAGATTAAGAAATAGAGATCTGCTTAGTTCTGCCAATGTAATGTGTGCTTTAAGTTTTGACCGTGATGAGGATTACATGGCAGCAGGAGGAGTTTCAAAGAAAATCAAGATTTTTGACCTCAATGCTATTTCAAGTGATTCTGTTGACATCCAGTACCCAGTGGTTGAGATGACAAATAAATCAAAGCTTAGTTGTGTGTGCTGGAACACCTACATAAAAAATCATCTGGCATCCACTGACTATGATGGTGTGGTTCAGATGTGGGATGCAGACACTGGTCAGCCATTGTCCCAATACAAGGAGCACCAAAAGAGAGCTTGGTCTGTTCATTTTTCTCGGTCAGATCCAAAAATGTTTGCTAGTGGAAGTGATGACTGCTCTGTCAAACTGTGGAATATCGGCGAGAAAAAATCTCTGGGAACCATCTGGAACCCTGCCAATATATGCTGTGTTCAGTTCTCTTCTTACTCAACAAATCTTTTATTTTTTGGGTCAGCTGATTACAAGGTTTATGGTTATGATCTTCGTCACACTAGGATTCCGTGGTGCACATTAGCTGGCCATAGCAAAGCTGTTAGTTATGTAAAATTTGTAGATGCTGAAGCAGTTGTGTCTGCTTCCACTGACAACTCTTTGAAGCTTTGGGACCTGAAGAAAACCAGCTCTTCTGGTTTGTCATCTGATGCATGTGTCGTAACCTATAAAGGTCATAGTAATGAAAAGAATTTTGTGGGATTATCTGTTTTGGATGGATACATTGCATGTGGTTCAGAATCTAATGAGGTGTACTGTTATCACAAATCACTGCCATTGCCAATAGCTTCTCACAAATTTGAATCAATTGATCCTATTTCTGGTCATCTAAATAGTGGTGATAATAATGGACAGTTTGTTTCTAGTGTTTGCTGGAGAAAGAAATCTAACATGCTTGTTGCCGCAAACTCAGTTGGAATTGTGAAGCTGTTGCAGATGGTCTGA 2598 0.3872 MGKAIISNNAHLISSITQSTSSSYNYPQFIVKQTRKGKGVICEDLDKSFGIVGAIKSQEDEKPFAPKFQYDTLRRSSVDDDNKPLVEGTVVSGSNGINLREWLKSECHNMMKLKRLHIFKQVLESVDFAHSQGLVLLDFQPSCFTLLPSSKIKYIGSYGRQQLGNEVMTCNVTRKRPLELNTCACLSLSTKQQKLFEETGSFRQSQQCSFTHGCRTTVNQTDSGTIRPLESRSKESMCQTISNCQHTFSKESQFVSATVQLEERWYCSPEMLNYGVCTLSSNIYSLGVLLFEMLCNIESREVHSTAMLELCHRILPPKFLAENPKEAGFCLWLLHPEPSSRPNARIILESEFIRESEESSSIDDVGISDDEAETDKLLHFLTTLREEKIKQAAKLEEQLNLLNEDIQEVERSYSFGTDSIFPLTQVNNSEVRENNLHFQDSSSSDISRSIRRSFGDEERFMGNISQLENSYFSTRTRVLSKNTSSISSNDKNLMENRWTLPQGEHANKEPRKIHTSVGCLGSFFEGLCKFACYSKFEERGRLRNRDLLSSANVMCALSFDRDEDYMAAGGVSKKIKIFDLNAISSDSVDIQYPVVEMTNKSKLSCVCWNTYIKNHLASTDYDGVVQMWDADTGQPLSQYKEHQKRAWSVHFSRSDPKMFASGSDDCSVKLWNIGEKKSLGTIWNPANICCVQFSSYSTNLLFFGSADYKVYGYDLRHTRIPWCTLAGHSKAVSYVKFVDAEAVVSASTDNSLKLWDLKKTSSSGLSSDACVVTYKGHSNEKNFVGLSVLDGYIACGSESNEVYCYHKSLPLPIASHKFESIDPISGHLNSGDNNGQFVSSVCWRKKSNMLVAANSVGIVKLLQMV* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00220 865 SMART WD40_4 675 714 IPR001680 GO:0005515
Lapu10g00220 865 SMART WD40_4 544 579 IPR001680 GO:0005515
Lapu10g00220 865 SMART WD40_4 632 672 IPR001680 GO:0005515
Lapu10g00220 865 SMART WD40_4 767 806 IPR001680 GO:0005515
Lapu10g00220 865 SMART WD40_4 817 863 IPR001680 GO:0005515
Lapu10g00220 865 SMART WD40_4 590 629 IPR001680 GO:0005515
Lapu10g00220 865 SMART WD40_4 718 756 IPR001680 GO:0005515
Lapu10g00220 865 ProSiteProfiles Trp-Asp (WD) repeats profile. 639 681 IPR001680 GO:0005515
Lapu10g00220 865 ProSitePatterns Trp-Asp (WD) repeats signature. 743 757 IPR019775 -
Lapu10g00220 865 SUPERFAMILY Protein kinase-like (PK-like) 96 356 IPR011009 -
Lapu10g00220 865 Coils Coil 378 412 - -
Lapu10g00220 865 ProSiteProfiles Trp-Asp (WD) repeats profile. 725 765 IPR001680 GO:0005515
Lapu10g00220 865 ProSiteProfiles Protein kinase domain profile. 1 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g00220 865 SUPERFAMILY WD40 repeat-like 553 861 IPR036322 GO:0005515
Lapu10g00220 865 PANTHER PROTEIN SPA1-RELATED 2 5 865 IPR044630 GO:0009640
Lapu10g00220 865 Gene3D - 523 865 IPR015943 GO:0005515
Lapu10g00220 865 PRINTS G protein beta WD-40 repeat signature 659 673 IPR020472 -
Lapu10g00220 865 PRINTS G protein beta WD-40 repeat signature 743 757 IPR020472 -
Lapu10g00220 865 PRINTS G protein beta WD-40 repeat signature 616 630 IPR020472 -
Lapu10g00220 865 Pfam WD domain, G-beta repeat 633 672 IPR001680 GO:0005515
Lapu10g00220 865 Gene3D Transferase(Phosphotransferase) domain 1 95 364 - -
Lapu10g00220 865 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 725 758 - -
Lapu10g00220 865 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 639 673 - -
Lapu10g00220 865 SMART serkin_6 42 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00220 Lapu-Chr10 4133814 4139752 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00220 636 805 Miscellaneous Gene Families AT5G08390 26.744 7.89e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Lapu10g00220 WD40 0.00029 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00220 K16240 - gmx:100799267 1409.43