Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00217 ATGAGAGAGATCAAGCAGCACAGCAGAATGTGCAGCAGCAACAGCTTCATCCTCACCCTCTTCCTCCTCATTGCACCAATCCTCTCCCTTTCATCTTCTTCCACACCCATCAACAGAAGAATCCTCCACCAACCCTTTCAGCCTGAAGGGGGTTCCCCACCTCCCTCACTTCCCCCAAACCCCCCTCCACAGCCCTCTCCTTCACCTTCACCTCCAAACCCAAAGTACCCATTTTCCACCACACCCACCAACAATGCTTCCACACCCTTCTTCCCCGCATACCCTTCTCCCCCACCTCCTCCTTCTCCTTCAGCTTTTGCTTCTTTCCCTGCTAACATATCCTCCCTCATCCTTCCCCAATCCACCAAGTCCAAATCTTCCTCCAAAAAACTCGTCGCCGTCGCCATCGCCGCTGTCGCCTGCGCTCTAGCCGTTGCCGCCCTCTCCGCCTTCGTCTACTGCCGCCGCCGACGCCAAAGTTACTCCGCTGACGAGAAAACCCTCAGATCCGACAGCAGCATCCGCCTCTTCCCCCGCGAAGCTTCTGCCGGTGCTGGTGGTGGCCGCAAACCGAGAAACACCTCTTCTACCAGCTCCGAGTTTCTCTACCTTGGCACCATTGTTAACTCCCGTGGCGGCAACGTCGATGAGCTCTCTGACTCGCACGCTGCCGCGTTGAACCCCCGTAAAATGGACTCGCCCGAGCTTCAACCGCTACCCCCGCTGGTGAGACAGGCTTCCAGGCTTAGAGAGGAAGCGGCGGCGACGGTGGAGGATGACGAAGAGGAGTTTTACTCGCCGAGAGGGTCGTTGAATGGAAGAGAAGGCTCCGCTGGAACTGGATCGGGTTCCCGGCGAGTTTTCTCCGCCATTGCTGGAGAAAATTTAGTTGGTCGTAGCAGTAGTGAGTCAACCAGTTCTTCTTACTCTTCTTCCTCTTCTGCTTCCCCGGATCGCTCTCATTCCATTAGTCTCTCTCCTCCAGTGAGCATAAGCCCCAGAAGATCACAACCCAAGTCGCCTGAGAATACATTAGTACACCATTCTCCGTCGCCACCTCCTGCGGCAATACGAAGATCGCCGTCCTTGTCAACACTGTCGTCGCCTTCTCCAGTTTTCGGACAGCACATGCCGTCGTCGTCGTCAATGTCGTCGACGCCAGAGCGGAGGGAGTGTCAGTCGCCATCGCTGTCGCCGCTTTCTCTATCGCCGAGGAAAAACCCAAACCCAGACGGTGATTCACCCCCAGGAGTTGTTGTACTTGAAAAGACGCAATCTTTTGGTTCGTCTAAGTCCAAAAATGACAGTGGGTCGCCGAGATTGTCCAACGCTTCTTCCATTGGGAAGTCCTCGGCGTTTTCTCTGCCGTCGCCAGATAAAGGGATGGACTTGCATCATGGGTTGGATCAGTCTCCGACCATATCCGATGTTTCAGATCGGTTTAGACATTCTCCTTTATCTTCATTGCCTTTGTCACCGACATTACTTTCGTCGCCGGAGAGAGAGTTGAATCCTCAACCTCAGTCTCAGACTCAACCTCAAGTACCACCTCCACGGAAACACTGGGAGATTCCTGACTTGTTGACACCAATGGGTGAAACACCGATATTTTCTGCTCCGCAGAGGAAACAATGGGAAATTCCGGTTCTTTCGGTACCAATTGCTCCATCAAATAGTAGTGTTTTAGCCCCTCCTCCACCGCCACCTCCACCACCGCCACCACCGCCACCTCCACCACCACCACCACCACCTCCGCCAGTTCCGCGGCAACGTAAGCAGTGGGACATGCCAGTGCCTTCTCCCGTGACGCCGGTGGGTCAACAGGTTTCGAGGCCGCCGGCGCTGACGCCGCCCTCTAGGCCTTTTGTGTTGCAAACTCCGAACACAAAGGTTTCTCCGGTGGAGTTGCCACCTGTTAGTTCTCAGAATTTTGAGGAGAGTTCTGAGGAGACATCCAAACCTAAGCTGAAGCCTTTGCATTGGGACAAAGTGAGGGCCAGCTCTGATCGTGAGATGGTGTGGGATCAGTTGAGGTCCAGCTCTTTCAAGTTGAACGAGGAGATGATTGAAACTTTGTTTGTGGTGAACACGCCAAACCCAAAACCTAAGGACACTACTCCTCGCTCAGTTCTTGCCCCGCAAAATCAAGAGGATAGGGTGCTGGATCCTAAAAAGTCCCAGAACATTGCTATCTTGTTAAGAGCACTCAATGTGACTATAGAAGAAGTGTGTGAATCACTGTTAGAAGGTATTACTGATACACTCGGAACTGAACTACTTGAAAGCTTGTTAAAAATGGCACCAAGCAAGGAAGAAGAACGCAAATTGAAGGAACATAAAGATGATTCTCCTACCAAGCTTGGTCCTGCTGAGAAATTTCTGAAGGCAGTGCTTGATGTACCTTTTGCATTTAAAAGGGTGGAAGCAATGCTTTACATAGCCAATTTTGAGTCCGAAGTGGAGTATCTTAGGAAATCCTTTCAAACTTTGGAGACTGCCTGTGAAGAGCTGCGAAACAGTAGAATGTTCTTGAAGCTTCTAGAGGCCGTGCTCAAAACTGGCAACCGCATGAATGTGGGGACAAACCGTGGTGACGCACATGCATTCAAGCTCGATACACTTCTCAAGCTTGTTGATGTCAAAGGCGCAGATGGCAAAACCACTCTACTTCACTTTGTTGTACAAGAAATCATCAGAACGGAAGGTGCTCGTCTGTCCGGCACCAACCAAACACCGACTGCGAATTTGAACGATGATGCTAAGTGTAGAAGGGTTGGCCTGCAAGTAGTATCTAGTCTGAGTTCCGACCTAGCAAATGTGAAGAAGGCTGCTGCAATGGACTCAGAAGTGCTAAGCAGCGAGGTCTCCAAACTCTCCAAAGGAATGACACACATTGCAGAGGTTTTGCAGTTGAATGAAGCAGCAGGGTCAGATGAAAGCAAGCAGAAGTTCAGAGAGTCAATGAACAAGTTCACAAGAATGGCCGAGGAGGAGATTTTAAAAGTCCAAGCACAGGAAAGTGTTGCTTTATCTCTTGTGAAGGAGATCACAGAGTATTTCCATGGGAACTTGTCAAAGGAAGAAGCTCATCCATTTAGAATTTTCATGGTGGTGAGAGACTTCTTAACAGTTCTTGATAGGGTGTGCAAAGAAGTTGGTATGATAAACGAGAGAACCATGGTTAGTTCTGCACATAGATTCCCTGTCCCAGTGAACCCTATGCTTCCACAACCCCTTCCTGGACTTGTTGGAAAGAGACAATACAATTCCTCAGATGATGATAGTCCATCTCCTTAG 3297 0.5065 MREIKQHSRMCSSNSFILTLFLLIAPILSLSSSSTPINRRILHQPFQPEGGSPPPSLPPNPPPQPSPSPSPPNPKYPFSTTPTNNASTPFFPAYPSPPPPPSPSAFASFPANISSLILPQSTKSKSSSKKLVAVAIAAVACALAVAALSAFVYCRRRRQSYSADEKTLRSDSSIRLFPREASAGAGGGRKPRNTSSTSSEFLYLGTIVNSRGGNVDELSDSHAAALNPRKMDSPELQPLPPLVRQASRLREEAAATVEDDEEEFYSPRGSLNGREGSAGTGSGSRRVFSAIAGENLVGRSSSESTSSSYSSSSSASPDRSHSISLSPPVSISPRRSQPKSPENTLVHHSPSPPPAAIRRSPSLSTLSSPSPVFGQHMPSSSSMSSTPERRECQSPSLSPLSLSPRKNPNPDGDSPPGVVVLEKTQSFGSSKSKNDSGSPRLSNASSIGKSSAFSLPSPDKGMDLHHGLDQSPTISDVSDRFRHSPLSSLPLSPTLLSSPERELNPQPQSQTQPQVPPPRKHWEIPDLLTPMGETPIFSAPQRKQWEIPVLSVPIAPSNSSVLAPPPPPPPPPPPPPPPPPPPPPPPVPRQRKQWDMPVPSPVTPVGQQVSRPPALTPPSRPFVLQTPNTKVSPVELPPVSSQNFEESSEETSKPKLKPLHWDKVRASSDREMVWDQLRSSSFKLNEEMIETLFVVNTPNPKPKDTTPRSVLAPQNQEDRVLDPKKSQNIAILLRALNVTIEEVCESLLEGITDTLGTELLESLLKMAPSKEEERKLKEHKDDSPTKLGPAEKFLKAVLDVPFAFKRVEAMLYIANFESEVEYLRKSFQTLETACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARLSGTNQTPTANLNDDAKCRRVGLQVVSSLSSDLANVKKAAAMDSEVLSSEVSKLSKGMTHIAEVLQLNEAAGSDESKQKFRESMNKFTRMAEEEILKVQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLTVLDRVCKEVGMINERTMVSSAHRFPVPVNPMLPQPLPGLVGKRQYNSSDDDSPSP* 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00217 1098 MobiDBLite consensus disorder prediction 559 592 - -
Lapu10g00217 1098 ProSiteProfiles Formin homology-2 (FH2) domain profile. 646 1071 IPR015425 -
Lapu10g00217 1098 SUPERFAMILY Formin homology 2 domain (FH2 domain) 576 1057 - -
Lapu10g00217 1098 SMART it6_source 646 1060 IPR015425 -
Lapu10g00217 1098 MobiDBLite consensus disorder prediction 251 268 - -
Lapu10g00217 1098 MobiDBLite consensus disorder prediction 358 408 - -
Lapu10g00217 1098 MobiDBLite consensus disorder prediction 555 655 - -
Lapu10g00217 1098 MobiDBLite consensus disorder prediction 1078 1098 - -
Lapu10g00217 1098 PANTHER FORMIN-RELATED 433 1085 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lapu10g00217 1098 MobiDBLite consensus disorder prediction 43 102 - -
Lapu10g00217 1098 MobiDBLite consensus disorder prediction 48 78 - -
Lapu10g00217 1098 MobiDBLite consensus disorder prediction 471 509 - -
Lapu10g00217 1098 Coils Coil 243 263 - -
Lapu10g00217 1098 Gene3D Formin, FH2 domain 640 1054 IPR042201 -
Lapu10g00217 1098 MobiDBLite consensus disorder prediction 423 453 - -
Lapu10g00217 1098 Pfam Formin Homology 2 Domain 648 1045 IPR015425 -
Lapu10g00217 1098 MobiDBLite consensus disorder prediction 621 647 - -
Lapu10g00217 1098 MobiDBLite consensus disorder prediction 249 540 - -
Lapu10g00217 1098 MobiDBLite consensus disorder prediction 295 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00217 Lapu-Chr10 4112450 4117628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00217 85 341 FH2 protein (formin) Gene Family AT3G25500 46.691 5.93e-29 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00217 - - var:108322602 1678.69