Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00213 ATGAGCTCTCAGTCACAACAACAGCAACAAGGCAAACACAAGAACCGAGAGGAAGAGAAAGAAGAAGAAGAAAATCGTTTGCTACAATCAGAATGCGAGACAATACCCTTGTCCTCACCCCACATATCACCCTCAAACTGGGAAAATGAAAACAAAAAAGAAGAAGAGGAGGAGGACAAAGACGCAGTGTATGCAGCTAAGGACAAGGTTCAGATATTCGACTTGGAGTCTGCTGGCGGTGCAGGGTCCACCATGGTGCCACCGTTTTCGTGGAAGAAGCTGTGGCTGTTCACGGGGCCAGGGTTGTTGATGAGCGTGGCGTTTTTGGACCCGGGGAACATTGAAGGGGACCTTCAAGCTGGTGCAATTGCAGGGTACTCCTTGCTTTGGTTGTTGATGTGGTCCACCATCATGGGGTTGGTGATACAGCTTCTGTCGGCGAGGCTCGGGGTGGCGACAGGGCGGCACCTGGCCGAGCTGTGCAGGGAGGAGTACTCCAATTGGGCAAGGTTGGTGCTGTGGATCTTGGCTGAGCTGGCTCTCATTGCTGCTGATATTCAAGAGGTTATCGGCAGTGCTATTGCTTTCAAGATTCTTAGCCATGGGCTTATCCCCATTTGGGCTGGTGTGGTTATCACAGCCACGGATTGTTTCTTCTTTCTATTTCTCGAGAACTATGGAGTGAGGAAATTGGAAGGTGTTTTCGCAGTTTTCATTGGAACTATGGGCCTTTCTTTTGCGTGGATGTTCTTTGATACAAATCCCAGTGAAGAAGAACTAATGATTGGTCTTTTAATCCCAAGACTTAGTTCAAAAACTCTTCGCCAGGCTGTGGAAATTGTAGGATGTGTGATAACCCCACATAATGTGTTCCTCCATTCTGCATTGGTACAATCAAGGGACATTGATATCCGTAACAAAAGCCAGGTTCAAGAGGCTCTCAACTACTACTCAATTGAGTCCTCAGTTGCACTTTTAGTCACATTGGTGATCAATCTATGTGTGATAACAGTTTTCGCTAGGGTGTTCTACGGTACAGAACAGGCCAACGGCATAGGATTGGTAAATGCAGGGCAATATCTGGAGGAGAGGTATGGGGGAGGGTTGTTTCCAATTCTCTATATATGGGGTATTGGTTTACTAGCAGCTGGCCAAAGTAGTACCATAACTGGCACATATGCTGGCCAGTTTATAACAGAGGGTTTTCTTAAACTCAATATAAAGAAGTGGTTGAGGGCATTGATCACTAGAAGTTGTGCAATTGTTCCAACTATGATTTGTGCAATTGTTTTTAATACATCAGAAAGTTCATTGGATACCTTGAATGAATGGCTTAATGTGGTCCAAGCAATACAGATTCCCTTTGCACTTATCCCCCTTCTTACTTTGGTGTCCAAAGAGGAGGTGATGGGTACCTTCAGAATTGGGCCTATAGTAGAGAAAGTGGCTTGGAGTGTGGCTGTGCTGGTAATTATGGTTTATGGATATATGTTATTAGATTTCTTTCTGGATGAAGTGGATGGAGTAGTGTTTGGTTTTCTAGTCTTCCTTGGTGCTTCTGCATGGATTTCATTTATTATATATTTGGTTAAACATAGTGGTGCCATTCCATCAATCCTGGTGAGGTCCCCTAATTCCAGAGGTTTTTTCTCTCTTTCTGGGAACTAA 1668 0.4484 MSSQSQQQQQGKHKNREEEKEEEENRLLQSECETIPLSSPHISPSNWENENKKEEEEEDKDAVYAAKDKVQIFDLESAGGAGSTMVPPFSWKKLWLFTGPGLLMSVAFLDPGNIEGDLQAGAIAGYSLLWLLMWSTIMGLVIQLLSARLGVATGRHLAELCREEYSNWARLVLWILAELALIAADIQEVIGSAIAFKILSHGLIPIWAGVVITATDCFFFLFLENYGVRKLEGVFAVFIGTMGLSFAWMFFDTNPSEEELMIGLLIPRLSSKTLRQAVEIVGCVITPHNVFLHSALVQSRDIDIRNKSQVQEALNYYSIESSVALLVTLVINLCVITVFARVFYGTEQANGIGLVNAGQYLEERYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLKLNIKKWLRALITRSCAIVPTMICAIVFNTSESSLDTLNEWLNVVQAIQIPFALIPLLTLVSKEEVMGTFRIGPIVEKVAWSVAVLVIMVYGYMLLDFFLDEVDGVVFGFLVFLGASAWISFIIYLVKHSGAIPSILVRSPNSRGFFSLSGN* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00213 555 Coils Coil 6 33 - -
Lapu10g00213 555 MobiDBLite consensus disorder prediction 31 46 - -
Lapu10g00213 555 Pfam Natural resistance-associated macrophage protein 114 476 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00213 555 MobiDBLite consensus disorder prediction 47 61 - -
Lapu10g00213 555 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 18 531 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00213 555 MobiDBLite consensus disorder prediction 1 61 - -
Lapu10g00213 555 PRINTS Natural resistance-associated macrophage protein signature 446 465 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00213 555 PRINTS Natural resistance-associated macrophage protein signature 203 222 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00213 555 PRINTS Natural resistance-associated macrophage protein signature 228 249 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00213 555 PRINTS Natural resistance-associated macrophage protein signature 412 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00213 555 PRINTS Natural resistance-associated macrophage protein signature 173 199 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00213 555 PRINTS Natural resistance-associated macrophage protein signature 277 300 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00213 555 PRINTS Natural resistance-associated macrophage protein signature 384 403 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00213 555 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 92 470 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00213 555 Hamap Divalent metal cation transporter MntH [mntH]. 80 502 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu10g00213 555 MobiDBLite consensus disorder prediction 11 29 - -
Lapu10g00213 555 NCBIfam Nramp family divalent metal transporter 99 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00213 Lapu-Chr10 4051027 4054977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00213 48 533 Inorganic Solute Cotransporters AT1G47240 71.006 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00213 K21398 - gmx:100801411 934.095