Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00175 ATGATGCCCGAGTGTCGACACTACTTTCACCTCTGCTGTCTCGACCCCTGGCTCAAGCTCAACGGCTCCTGCCCTGTTTGCCGGAACTCCCCTATGCCTACGCCCTTGTCCACGCCGCTGCAGGAGGTGGTGCCGCTCTCGCAGTACGCCGCCGATGCCAGGGGGAGGAGTCCTGAAGATAAGGGAATGACAAAACTGAATGTTAATACTAAGTTAAAAAAGTGTAGAAGTGTTTACTATTTTATCTTTGTACCGGGTGCTCTTGCTCTTCTCCTGTCTGTTGCGGCCATGTCCAAGTTCCTCTCCTTCAAGTCATTTCTTGGTAATGAATCTTTATACTCAAATCTGAATCCTGAGGTCCCATATGGGAGTGAAAATGAAGTGATGATTATAACTGTTGAAATTGTGATTCAGAAAATTCAAGAGCAAATGGAAAAACTGAGGGAAACAAAACAGGATCCATCATCATCCCCATTTGTATTCCAGCAATCTGCATTTCTTGCTGATATATTAGGACTTCTAGAGTCAGCAGCGACGTCTCATCAACACAGTGAAGGTAATAACCAGAAAAATGGTAGATTCACCACTCATCCTCTGGTGAGAAAAAAGAAACGATCAGACGAACCTGCTGATTACTTTCTCCGAGAAGAAATTCGCAAGTATGTCATGATCAAGCCTAACAGATTAGGAAAACAAAATTTTATGGGTGCTAATGCAAGCTTCACCAGCATAGGCCATGCGTGCTTTGCCATGAAGGAGGAGCTAGAAGAATACATGGATTATGATGTTGGAGAGATCTGCAATGATGACTGGAAACTAGCTCAAAAGCTTATGGTTCATGGCTGCGATCCTTTACCAAGGAGAAGGTGCTTTTCAAGGGCCCCTAAGCTATACAACCAACCATTTCCCATCACTGAATCCTTGTGGAAACTCCCTGATGATAGAAACGTTAGATGGAGTCAATACCGGTGCAAGAACTTTGCTTGTCTCGCTGGCAACACAACTCGTAAAGGATTCTTCAAGTGTGCAGACTGCTTCAACCTCACCAACCATGAGATGCCTAGATGGGTGAGCCTGGAGAGTGATTCAAACCAGACAGCTGATTTTTTAATATCTGAGGTTCTTGGAATTAAACCGGGAGAGGTAAGAATAGGCTTGGACTTCAGTGTTGGAACTGGAACTTTTGCTGCTAGGATGAGGGAATTCAATGTGACAATAGTCTCAGGCACTATCAATTTTGGGGCACCCTTCAATGAAATGATAGCTCTTAGAGGACTTGTTCCTCTCTACTTGACTATTAATCAAAGGCTTCCCTTTTTTGACAACACCCTGGATTTGATTCACACAACTAGGTTTCTAGATGGATGGATTGATTTTGTGCTCCTTGAGTTCATATTGTATGACTGGGATAGAGTTCTGAGGCCAGGGGGTTTGCTTTGGATTGACAGCTTTTTCTGCTTGAAGGAAGATTTATATGATTACTTGAAGGCCTTCAAAATGCTGAGATATAAGAAACTCAAATGGGTGGTTGTTCCAAAGCTTGATAAAGATGATCAAGAAATGTTCTTCTCTGCCGTTTTAGAGAAGCCTCCTAGACCGTTCAGGTGA 1608 0.4353 MMPECRHYFHLCCLDPWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSQYAADARGRSPEDKGMTKLNVNTKLKKCRSVYYFIFVPGALALLLSVAAMSKFLSFKSFLGNESLYSNLNPEVPYGSENEVMIITVEIVIQKIQEQMEKLRETKQDPSSSPFVFQQSAFLADILGLLESAATSHQHSEGNNQKNGRFTTHPLVRKKKRSDEPADYFLREEIRKYVMIKPNRLGKQNFMGANASFTSIGHACFAMKEELEEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCFSRAPKLYNQPFPITESLWKLPDDRNVRWSQYRCKNFACLAGNTTRKGFFKCADCFNLTNHEMPRWVSLESDSNQTADFLISEVLGIKPGEVRIGLDFSVGTGTFAARMREFNVTIVSGTINFGAPFNEMIALRGLVPLYLTINQRLPFFDNTLDLIHTTRFLDGWIDFVLLEFILYDWDRVLRPGGLLWIDSFFCLKEDLYDYLKAFKMLRYKKLKWVVVPKLDKDDQEMFFSAVLEKPPRPFR* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00175 535 SUPERFAMILY RING/U-box 2 32 - -
Lapu10g00175 535 Coils Coil 130 153 - -
Lapu10g00175 535 MobiDBLite consensus disorder prediction 181 203 - -
Lapu10g00175 535 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 354 519 IPR029063 -
Lapu10g00175 535 Gene3D Vaccinia Virus protein VP39 355 511 IPR029063 -
Lapu10g00175 535 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED 99 533 - -
Lapu10g00175 535 ProSiteProfiles Zinc finger RING-type profile. 4 28 IPR001841 -
Lapu10g00175 535 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 376 487 IPR004159 GO:0008168
Lapu10g00175 535 MobiDBLite consensus disorder prediction 181 195 - -
Lapu10g00175 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 32 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00175 Lapu-Chr10 3578273 3582184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00175 2 54 C3H Transcription Factor Family AT2G35910 64.151 7.86e-18 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00175 - - var:108346439 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00175 10 3578273 3582184 Lapu10g00175 10 3578273 3582184 ECH