Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00164 ATGGAAGCAGATTGGGATCTTCACGCCCTCGTCAGAAGCTGTACCACCACTTCCTCCGGCGCCGCGGCCACCACCGCATCCACCACCCCATCTTCTGGCTTTGGTGCTTGTAACCCACCTTCTACTTCCTGCAGCTTCTTCTCTGCTTACAACCCTGCTGTACAAGGAGGTCAAGTTGTGTCCTCTTCGGAGAATCAGGCAACGACTTCCATTGAAGAGCTTCAGGAGCTTTGCAAGCCTTTCTTTCTCAAACCACAGTTTCAGACCTTCCAACCCTCTTCTCCTCTCTCTTCCTTTTCTTACTCATCAGTGTCCAAATCACCACCTCCCGGGCAGCAAGAACAGAAGCAGCCTCCCCATGCCGGTTCTGCCTCCACCCCAAAATCCAAAAGAAGGAAGAATCAGCTTAAGAGGGTTTGTGAAGTGTCAGCTGAGAACCTCTCCTCAGACATATGGGCTTGGAGGAAATATGGACAGAAACCCATCAAAGGGTCACCATATCCAAGGGGATATTACAGATGTAGCAGCTCAAAAGGATGTTCAGCTAGGAAACAAGTTGAGAGGAACAGATCCGACCCAGCAATGTTCATAGTGACATACACGGGTGAACACAACCACCCTGCTCCTACTCATAAAAGCTCCCTTGCTGGCTCCACGCGCTACAAACCTCAGACTGGTGGAGACACAGCCACCACAAAACCGGTTTCTCCAGCCACCTCATCAGATGTGGCACAGCACAGTACAAAGTCAGAGTGCACAGAAGAGGACTTGGAAGAGCTGATGAAAGACGATGAAGAACCAAATGAATTTGATATAATAGAAACAGTGGTAACAGATGATTTCTTTGAAGGGTTAGAGGAACTGACAGGGTCTGCCACTGATCCCTTTACAGCTAGTAGCAGCATTGATCGGTGGCCACTGGCCAATAATGCTACCACTGCCGCTGGTGGTAGCTGA 957 0.4984 MEADWDLHALVRSCTTTSSGAAATTASTTPSSGFGACNPPSTSCSFFSAYNPAVQGGQVVSSSENQATTSIEELQELCKPFFLKPQFQTFQPSSPLSSFSYSSVSKSPPPGQQEQKQPPHAGSASTPKSKRRKNQLKRVCEVSAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERNRSDPAMFIVTYTGEHNHPAPTHKSSLAGSTRYKPQTGGDTATTKPVSPATSSDVAQHSTKSECTEEDLEELMKDDEEPNEFDIIETVVTDDFFEGLEELTGSATDPFTASSSIDRWPLANNATTAAGGS* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00164 318 Gene3D WRKY domain 132 202 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu10g00164 318 MobiDBLite consensus disorder prediction 203 268 - -
Lapu10g00164 318 MobiDBLite consensus disorder prediction 99 136 - -
Lapu10g00164 318 MobiDBLite consensus disorder prediction 99 124 - -
Lapu10g00164 318 MobiDBLite consensus disorder prediction 206 247 - -
Lapu10g00164 318 FunFam WRKY transcription factor 22 132 202 - -
Lapu10g00164 318 Pfam WRKY DNA -binding domain 150 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu10g00164 318 SUPERFAMILY WRKY DNA-binding domain 144 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu10g00164 318 ProSiteProfiles WRKY domain profile. 143 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu10g00164 318 SMART WRKY_cls 148 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu10g00164 318 Coils Coil 243 263 - -
Lapu10g00164 318 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 291 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00164 Lapu-Chr10 3463845 3465398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00164 1 317 WRKY Transcription Factor Family AT4G01250 44.807 1.53e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu10g00164 WRKY 2.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00164 K13425 - gmx:100815829 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00164 10 3463845 3465398 Lapu7g02005 7 36287633 36288800 ECH
Lapu10g00164 10 3463845 3465398 Lapu10g00164 10 3463845 3465398 ECH
Lapu10g00164 10 3463845 3465398 Lapu1g01508 1 27850222 27852313 ECH
Lapu10g00531 10 7619508 7635540 Lapu10g00164 10 3463845 3465398 ECH
Lapu1g01508 1 27850222 27852313 Lapu10g00164 10 3463845 3465398 PCT