Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00163 ATGGTGGACGGCGGCGACTTCGCCGGCACCATTTGCTCGATCTGCTACGAGCCTCTCAACCCCATTAGCGAGGACCTGCAATCGGTCTCAATCTGCGGCCACGTCTTTCACGAGCTTTGTCTGCAGCAATGGTTCGAGTACAGTTCGAAAGGGAAGAAATACACTTGCCCTATTTGCAAGCAGAGTTGCAGGGCCAGCGACGCCTGCAGGCTTTATTTTCAGTCTGTGGGGGACGCAAGTGATGGTGGGAAGCTTCAGAAGAGCTTTGAATCTGAGGAAAATGTTGGGGTTCTGCGTAGGGAAGTGAATAGATTGGAGGTGAAAGTTTCGGGGCTTACTTCTGAGCTAGAGCGGCAAACAAAAGAATTGGAAGGAGTTAAGGAGGAGCTTTGTTTTTGCAAGGAGCAGGTAAAGATAGAAACAGCATTAAAGAGTGAGGCTTTAAATCAAAAAGCGTCCATACAATTCCAGTTTCATAAGAAATCAGAGGAACTTGAGAAGTCAACTTTGGAGTCTTTTAGATTAAAAGAAAAGAATATGGCTTTGGCTAAAGAACTTGCAGCATTAAAATTAGTGTCTGATCTGGACATTGATGAAGAGGAGGTTTTGAAGCTTGCCACTTTCGGTAATGGGGCCAACAGTAAAGACACTATAGATACATTGAAAAGATCTCTTGTCATGCGGAACAGGAGTTACAAAGAATTGATGGCCAAGTGCAATGTTCTAGGAAGAGGCGAGGCTCGTTACAGCAAAAAGCTTGAGAAGGCTAAAGAAAAGATCACTAAACTGAAGGTAAGGGTACAAGAACTGGAGACATTAGCTGAAGCAAAAGAGAATGAATATCTGATGTCTCTGAAACTTTCAAAAAGAAAGAAGAGTTCAAAGAATCTTGAAAATAATTTCACTGATTCTGATGCATTGAATGCTTGCAAAATTTCTCCAGAAAAACAAAGCAAACAAATCTCAACACCCAAATCTGGAATAAACCTGGCTGCAAACGACAATAGTAAATCTTTTCAATCTTTGAAGATCGAGAACTCCAATGCTACTACAAATAAGACTGTGAATATTAGTAATGGAACTCCTGATAAAAAGATAGACTATATCACAATTGATGAAGATGATTTAGGAGGAAATAATGCTTTGCAAGAATGTTCAAAACACAACTACAAAGATCGAGACAGGGATGATATTGCTTTTAGCAAGCCTTCTCTAGCGAAGCTAGAGACCATGTCTGCCACAAAAACAGAAACATTATTGCAAGAAAAACGTACTTTGGCTGAGTCTCCCAGAGTTCATCTTGACACGGACATGGCTAACATTTCAGCTGGTCCTACGGATGAAGATGTAACTTTACAAACCACCATTAACCAACCTGTGGTGAACATTAGAAAAGAGTCACCATTTACAGTTTCCAATTCAGGTCCAGAGAATATATGCTTTTCTGGTGGATTGCTTGGTCCTGATGGAACTCATAGGTTTTTGGGAAAATGGTGCAAGCGTGGACAGAACAATGAATCATCATCTGCAAAAAGATCAAGTAATGGGGATTTAATAGCTGTCGGGGCTGATGGTAGAGGTGGCAGAATAAAAGTTCTAAGGACTCCTACCCAAATCCTCTCGGGTGGTAAGGAAAATTCAGCAAGTTCAAAAAGGCCAAAGCTTGGAGCTAAAACAAGTAGTTTGCATTCCCAGGGATGTCTGCAGATAGAACACTTTTTTGGGAGAGTCACTCAGTAA 1740 0.4144 MVDGGDFAGTICSICYEPLNPISEDLQSVSICGHVFHELCLQQWFEYSSKGKKYTCPICKQSCRASDACRLYFQSVGDASDGGKLQKSFESEENVGVLRREVNRLEVKVSGLTSELERQTKELEGVKEELCFCKEQVKIETALKSEALNQKASIQFQFHKKSEELEKSTLESFRLKEKNMALAKELAALKLVSDLDIDEEEVLKLATFGNGANSKDTIDTLKRSLVMRNRSYKELMAKCNVLGRGEARYSKKLEKAKEKITKLKVRVQELETLAEAKENEYLMSLKLSKRKKSSKNLENNFTDSDALNACKISPEKQSKQISTPKSGINLAANDNSKSFQSLKIENSNATTNKTVNISNGTPDKKIDYITIDEDDLGGNNALQECSKHNYKDRDRDDIAFSKPSLAKLETMSATKTETLLQEKRTLAESPRVHLDTDMANISAGPTDEDVTLQTTINQPVVNIRKESPFTVSNSGPENICFSGGLLGPDGTHRFLGKWCKRGQNNESSSAKRSSNGDLIAVGADGRGGRIKVLRTPTQILSGGKENSASSKRPKLGAKTSSLHSQGCLQIEHFFGRVTQ* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00163 579 Pfam Ring finger domain 11 60 IPR001841 -
Lapu10g00163 579 Coils Coil 102 129 - -
Lapu10g00163 579 SUPERFAMILY RING/U-box 11 64 - -
Lapu10g00163 579 MobiDBLite consensus disorder prediction 535 558 - -
Lapu10g00163 579 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 577 - -
Lapu10g00163 579 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Lapu10g00163 579 MobiDBLite consensus disorder prediction 539 558 - -
Lapu10g00163 579 SMART ring_2 12 59 IPR001841 -
Lapu10g00163 579 Coils Coil 246 280 - -
Lapu10g00163 579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 61 IPR013083 -
Lapu10g00163 579 SMART ringv_2 11 60 IPR011016 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00163 462 579 C3H Transcription Factor Family AT4G01270 47.154 7.75e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00163 K11985 - gmx:100812811 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00163 10 3436676 3441634 Lapu10g00163 10 3436676 3441634 ECH